RNA id: XM_026930428.2


Basic Information

Item Value
RNA id XM_026930428.2
length 2388
RNA type mRNA
GC content 0.49
exon number 15
gene id cdc14ab
representative False

Chromosome Information

Item Value
chromosome id NC_047605.1
NCBI id CM018551.1
chromosome length 26640196
location 12512888 ~ 12561781 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

ttttaaacactttattcagGATTATGGAGTTGAAAGTGGACGCCGCGCGCGCTCCATTCATTAACGTTGACTCTTGGACAGATTTAGCATGTTAGCATCGCAGCTCGTAGTTGTATCTAGGAGTATACAAATACTAtgtaagagaaaaaaagtgtaggcgattaaatttgttttaagtTCAGCTATtgtttcctgaactgaaaatgACGTGTATTGTGAAGTAAGGTTGAAAAAAGCGATAAGTTTGTGTGCACGGGGAAAACGGCTCGCGACGCTGCAGGAGCTCGAGACTGTTCAGTTTCTTCTCTACGCacaactttttaaacattttttaagccCATGACTTTAGACCACCTTAAACACACCGCCATCCTTTCACCTCTGTATAAAATGGCTGATGATAATGACCTAATAGGAGCTTCAGAGTTTATAAAAGacCGGCTCTATTTCGCCACCCTGAGAAGCAAACCGAAGagcacagcaaacacacactattTCTGCACAGATGATGAGTTTGTGTATGAAAACTTTTATGCAGACTTTGGACCGCTCAACCTTGCCATGCTGTATAGGTACTGCTGTAAACTTAACAAAAAGTTAAAGTCTTTCACACTGACCAGAAAGAGGCTTGTGCACTACACCAGCTTTGACCAGCGCAAGAGGGCGAATGCTGCTGTCCTCATCGGTGCCTATGCCGTGATTTACCTGAAGAAAACTCCAGAGGAAGCGTACAGAGCTTTAATCTCTGGCTCTAATGCCTCTTACCTGCCATTCAGGGATGCATCGTTTGGAAATTGCACATACAACCTGACTGTTCTTGACTGTTTGCATGGAATCAGGAAGgcCCTGCAGCATGGCTTCTTGAACTTTGAGACGTTTGACGTAACTGAGTATGAGCACTATGAGCGTGTAGAGAACGGAGACTTCAACTGGATCGTCCCCGGCAAATTCCTGGCCTTCAGCGGGCCGCACCCAAAGAGTAAAGTAGAAAACGGCTATCCTCTCCATGCCCCCGAGGCTTACTTCCCATACTTCCGCAAGCACAACATCACTACCATTGTCCGCCTGAACAAGAAGATCTATGACGCCAAGCGCTTCACAGATGCCGGCTTCGACCACTATGACCTGTTCTTTGTGGACGGCAGCACGCCCAGCGACGTCATCTTGCGCCGCTTCCTGCATATCTGTGAGAGCACGGATGGTGCCATCGCTGTCCACTGCAAGGCTGGTTTGGGCAGGACAGGCACACTGATTGGCTGCTACCTGATGAAACACTACCGATTCACTGCAGCTGAAACCATCGCCTGGATCCGTATCTGTAGACCTGGCTCTATCATCGGACCCCAGCAGCACTTCCTAGAGGAGAAGCAGGCGAATCTGTGGGCTCAGGGAGACGTGCTTCGCTCTAAGCAGCAGAAATCGCGGGTGTATGAGGAAAGCAGCGTTCACCGTCTCATCTCTAGCATGGATGACCTGACCATCAGCAGCAGCTTCCTCAGATCTGGCAGCATGGAAGAGAATGGTGAATACAGTGAAAACAGTCTCGGCATGACTCAAGGAGACAAACTGCGTGCCTTAAAGGGCCGGAGGCAGCCCAGGTCATCCACCTCCACAACTCTGAGACTGACTGGCTCCAGTACTCACGGCCAAGGTTCACCTCTCAAACCCTCCAAATTGCCGTCCTCTTCCTCCACTTCCTCCGCTGCCTCTGCATCGTCCAAGAGAATCAGTCGAATCTCTTCTTCCTCAACCAACCTCAAGAGCTCCTGTCTAAACTCCAGATTAGCCACCTCATTGGGCAACCTGTATGTCATCACCAGAGACTCTGGGAATCACCCTCAACCCTTGTTTGCATCCTCGTCTCCGTCCTCGTCTCCATCCTTCCCTGTCCCCCGTGCCACGTTTGCCAGCATCTCGGCTCTAGCTGCACATAGTTTTCCTTACGAAGTCAACAACAACAGTGATCAGTATAGCGCCTCCAATGCCAATTCCAAGATCTCGGCATTCAGCAACCACAACCACAGCAGCCTAGGTGGATCTTCCACCACTGGGAGGTTTGGCTTTGAGGAGCCAGGTCAGAATCCGGCCACCGCAAGTCTGAGTCAGCCCTCGGCCCGCTACCTCAGCCGCTCCATTCCCtCCCTTCAGTCGGAGTGTGTTCGGTATTAAAGCGGCAACTCTGCACTGATCCTGAACCTGTCCTCCTGGCCCATCATTCTTTGTCCACTCGCTGACATCCAGCTTGCTATGTGAGCACAAAAGGACCTGAATAAAGCCAGAGGTGCTGGAACTCGGTCTGTATGTCCAGTGTTAAAATGCTCTGAAGGAAAACTCAGAATTATCTGTTTTGAAATacatgtgctctctctctctctctaagatATGTAt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU213262 lncRNA upstream 15237 12496731 ~ 12497651 (+) True G180246
TU213255 lncRNA upstream 26144 12486506 ~ 12486744 (+) True G180242
TU213207 lncRNA upstream 89736 12422702 ~ 12423152 (+) True G180205
TU213194 lncRNA upstream 119397 12392887 ~ 12393491 (+) True G180192
TU213141 lncRNA upstream 325918 12181015 ~ 12186970 (+) True G180144
TU213314 lncRNA downstream 94693 12653796 ~ 12654215 (+) True G180267
TU213315 lncRNA downstream 95319 12654422 ~ 12682563 (+) True G180268
TU213659 lncRNA downstream 277765 12836868 ~ 12841282 (+) True G180516
TU213678 lncRNA downstream 291857 12850960 ~ 12851179 (+) True G180534
TU213871 lncRNA downstream 577034 13136137 ~ 13203148 (+) True G180695
XM_026930321.2 mRNA upstream 4985 12497851 ~ 12507903 (+) True rtca
XM_034308406.1 mRNA upstream 25279 12484123 ~ 12487609 (+) False LOC113536408
XM_026930294.2 mRNA upstream 25279 12484123 ~ 12487609 (+) False LOC113536408
XM_034308407.1 mRNA upstream 25279 12485848 ~ 12487609 (+) True LOC113536408
XM_026930503.2 mRNA upstream 33119 12473935 ~ 12479769 (+) True trmt13
XM_034308860.1 mRNA downstream 6115 12565218 ~ 12566601 (+) True LOC117598419
XM_034308475.1 mRNA downstream 14054 12573157 ~ 12582163 (+) True LOC117598398
XM_034308476.1 mRNA downstream 14054 12573157 ~ 12582163 (+) False LOC117598398
XM_026930763.2 mRNA downstream 28370 12587473 ~ 12590364 (+) True LOC113536666
XM_034308897.1 mRNA downstream 43228 12602331 ~ 12605805 (+) True LOC117598432
trnag-ucc_15 other upstream 124647 12388170 ~ 12388241 (+) True trnag-ucc_15
TU213163 other upstream 179257 12328066 ~ 12333631 (+) False timm13
TU213106 other upstream 457139 12054958 ~ 12055749 (+) True G180121
TU212683 other upstream 1083549 11428613 ~ 11429339 (+) False G179758
XR_003403710.1 other upstream 1094645 11418114 ~ 11418243 (+) True LOC113536800
TU213294 other downstream 14090 12573193 ~ 12602064 (+) False LOC117598398
TU213850 other downstream 537270 13096373 ~ 13098156 (+) False ankmy1
trnag-gcc_9 other downstream 691267 13250370 ~ 13250441 (+) True trnag-gcc_9
trnag-gcc_10 other downstream 696954 13256057 ~ 13256124 (+) True trnag-gcc_10
trnag-gcc_11 other downstream 698905 13258008 ~ 13258076 (+) True trnag-gcc_11

Expression Profile