RNA id: TU213659


Basic Information

Item Value
RNA id TU213659
length 548
lncRNA type sense_over
GC content 0.33
exon number 2
gene id G180516
representative True

Chromosome Information

Item Value
chromosome id NC_047605.1
NCBI id CM018551.1
chromosome length 26640196
location 12836868 ~ 12841282 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

tgtttttttttttttctctctctctctctctctctctctctctctttttttttgggagcTAAATAACATGAAGCCTCACATTTCATTAGATGCTCACTTGTGCTGTATTCATCTCCGTTACCTCCATTGTGCAatagtttgtatatttttatttgtgtactgaAATACCTGTAAACTCATTTTaactcttttatttctttatgaaaATGTGAGTGTTTTAAATGCCTGGTCATGTCAAAGCAAACGATCCACCGATCATGCGCTGGTTGCGCTCTTTTCGGCCTGCCTTATTCCCTCGCCTCTAGACGACGAACAAACCAAATTATTAATCACCATactgaaatgcatttaaaaaacataagtACATAATGTATATTACATGTTATATTTGTcttataaaaaacaaataactcCAAATGTGTAACTGGAAGCATTTAAAAAGATTTCAGAAATTAATAGTCACTAGAAAAGCTTGGGTTTATTTGAAGATGCCAATGCTTGCTATGTGGTCCTTTGTTTCacagaataaaatatacaccATTTCAGAT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU213315 lncRNA upstream 154305 12654422 ~ 12682563 (+) True G180268
TU213314 lncRNA upstream 182653 12653796 ~ 12654215 (+) True G180267
TU213271 lncRNA upstream 275087 12543667 ~ 12561781 (+) True cdc14ab
TU213262 lncRNA upstream 339217 12496731 ~ 12497651 (+) True G180246
TU213255 lncRNA upstream 350124 12486506 ~ 12486744 (+) True G180242
TU213678 lncRNA downstream 9678 12850960 ~ 12851179 (+) True G180534
TU213871 lncRNA downstream 294855 13136137 ~ 13203148 (+) True G180695
TU213916 lncRNA downstream 360589 13201871 ~ 13285070 (+) True G180738
TU213946 lncRNA downstream 395195 13236477 ~ 13239583 (+) False aqp12
TU214029 lncRNA downstream 457998 13299280 ~ 13302297 (+) True G180833
XM_026930647.2 mRNA upstream 104176 12722857 ~ 12732692 (+) True zbtb37
XM_026930649.2 mRNA upstream 104176 12722857 ~ 12732692 (+) False zbtb37
XM_026930823.2 mRNA upstream 116439 12716584 ~ 12720429 (+) True s1pr1
XM_034308640.1 mRNA upstream 170858 12645186 ~ 12666010 (+) True slc30a7
XM_034308473.1 mRNA upstream 212920 12615074 ~ 12623948 (+) False vcam1b
XM_026930880.2 mRNA downstream 105758 12947040 ~ 12948807 (+) True mrpl54
XM_026930877.2 mRNA downstream 109116 12950398 ~ 12974799 (+) True malt2
XM_026930878.2 mRNA downstream 116134 12957416 ~ 12974799 (+) False malt2
XM_026930491.2 mRNA downstream 135236 12976518 ~ 12990417 (+) True safb
XM_026930798.2 mRNA downstream 150982 12992264 ~ 13024225 (+) True si:ch1073-396h14.1
TU213294 other upstream 234804 12573193 ~ 12602064 (+) False LOC117598398
trnag-ucc_15 other upstream 448627 12388170 ~ 12388241 (+) True trnag-ucc_15
TU213163 other upstream 503237 12328066 ~ 12333631 (+) False timm13
TU213106 other upstream 781119 12054958 ~ 12055749 (+) True G180121
TU212683 other upstream 1407529 11428613 ~ 11429339 (+) False G179758
TU213850 other downstream 255091 13096373 ~ 13098156 (+) False ankmy1
trnag-gcc_9 other downstream 409088 13250370 ~ 13250441 (+) True trnag-gcc_9
trnag-gcc_10 other downstream 414775 13256057 ~ 13256124 (+) True trnag-gcc_10
trnag-gcc_11 other downstream 416726 13258008 ~ 13258076 (+) True trnag-gcc_11
trnag-gcc_12 other downstream 422542 13263824 ~ 13263894 (+) True trnag-gcc_12

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) TU179609 True 1293 lncRNA 0.35 1 CI01000030 1097921 ~ 1099213 (-)
mexican tetra (Astyanax mexicanus) TU179609 True 449 lncRNA 0.54 3 NC_035911.1 18016022 ~ 18017657 (-)