RNA id: XM_034308898.1


Basic Information

Item Value
RNA id XM_034308898.1
length 3937
RNA type mRNA
GC content 0.49
exon number 19
gene id ankmy1
representative True

Chromosome Information

Item Value
chromosome id NC_047605.1
NCBI id CM018551.1
chromosome length 26640196
location 13096373 ~ 13111706 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

AGTCGCTCGCTTACAGAAATAACACTCGACCTGCTGTGTGGTGGCAGTGTGTCgttatgttttttaaagtgaaatgttttcGTAACTCGTCCGTTTAACATGGTGGTTTAGGTGTAGAATGTCCTCAAAGGGACGCAGAGTGTCCGAGGAGAAGAGGGGCCATGATGAAGGCCGGCTTGTGTGTGAGGAACGGCTCGGGAGTGCAGGAGTGGACGGACGGGTCCAGATATGAGGGAGAGTTCCTGAATGCGCTAAAACACGGCGACGGAGCTTTCACCTGGCCTAACGGAGAGtgTTATAAAGGCTCCTTCTACAAGGATTACCGCCATGGCAGAGGAACCTACTTCTGGCCAGATGGCTCTCAGTTCAAGGGAAGGTTTTATCTGAATCATAAAGAGGGCTATGGCGTCCATCTTTTCCCTGATGGAACCATTTTTGAGGGTCTGTACCATGCTAATGAGCGTTTCGGACCTGGAGTGATGTCATATCCTGATGGCCGCCAGGATGTTGGTCTATGGTACCGCCAGTGGCTACTGCGACTCTGCACCACTGTTAAGGGAGGCTTCACCTTAACGGACATCCCGGAACACATGGCCCGACTCACACGGCAAAACCTGACACAGATCAAGTCTCCGCCTTCCTTCACAACGGGGTCTTGTATGGAAAGCCAGAATTTCTTCACAGTTGACACATATCTGCTGAGCGACTCCTCTCATCAGGAGGACGAGCAGTTCATCCTTCCCCCAGGCATTGAGAGCTACTCCACCGACTCAGACCACCTGCCTATACCCCGGCGCCTGCGTCAAGAACTCGACTTGCACTTCTTTAACAGAAGCAATGTCAGCATGCCTTTGTTCTCTAATGGAGTACCTCTTCAGCAGAGAATGGAGGCTCACATCCACTCACACAGATTTGAGGTTGAGGATTTGGACTGGGATGTTGCCGCTGTCCTGGCTATGAACCGGGATCGCTTTGGATCTAAGGGCCCTCTGGAGCTCAGGTCAGAAAGGCTCATTAGAGAGGCATCGCTTGGTGACCTCCAGAAGGTCCAGAGCATCCTTAGAGATGGAAAAGTTCACCCGGATGTAGGTGATGTGAGCGGACACACTGCACTCATCGCAGCTACGGTCAGTTGTCATTATGATGTGATCAACATGCTGCTGGACAGTGGGGCCGATGTGAATAAGCTGAATGCTGAAGGGATGTCTGCTCTGGCTGTGTGCAGTGTCCTTTACTACCCACTCCATTCTCTACAAGAGACAGTGGCTGAAAAGACTTCTCAGGATGTCACCACAGACCCAGAGATCAGCGAGTCCTCAACCCTGGCAAACAGCCCACAGGGGGCTGCAGGTGAGGAAAGGCCAAAAGATGACGTTGATACAGAACTGTCAGTCACAGACAGCCAAACTAACCAGGTGAAGCCTGAAGAGTGCAGCACAGCTCAAAAGCCTGAAGCTCCCGAGCACGCTGAGGAAATTAAAACCACCAGTAAAGATGAAGTGGTTCATCAGCAGATGCAAAATGGGCAGGGCAGGGTGGTAGAGGCTTCTGCTTGCCGCCAAGGTGATGATGAGGGTGAAAATGTCCTTTCCgctgagaaagaggaaaaaattgACAGAAATAGGACCCCAGGAAAGGACCCTGGTTTTGACTTGGCTAGTTCTGTGACTAGCTTCCACACCGACACAACAGAGGACATCATGCAGCAGATGGCTGAGGTTCCTTGTGAAACTGGTCAGGTGTCATCTGCAGAAACTCAGGAGACAGTTCACAGGATGACTGTCATGAAAACTGAAAATGAGGCCTACTGGGCCACCATGAAGCTGCTGCTGGAGCGAGGAGCGGACCCAAACGTGTCCAGCATTCCGATGCCTGTCATTTTCCTGGCCATAAAAGCAGGCCACGTTGAAGCTGTGCAGAGGCTGCTAGAATGTGGCGCTCGCACAGACCTGCACTTAACAGCTGAGCAAAAGGGCCTGTACCCGCTCCATGTAGCAGCTGGACTAACTGGCCCAGAGGGTCCTAAGATCACAGAGCTGCTCCTGCATGCTGTTGCAGACCCTGGTGAAGCACAGGACTCCAGCGAAGTGTACGATCTGGACAAGaCCTCAAAGGAGGAGCAGGTGGGTGGTGGAAACTCGTCGTCCCTGGGTTCTGAACCCCCAACCTGCATTTATACATCCTCCGTAGAGGCACGTAAGGAAGGGGGAAGGACTCCACTTCACGTGGCCTGCCAAAGAGACACGGATTACGCAAATGCCAGAGATGTCGTCTCTATTCTTCTCTCCCACAAAGCAAGCACTGACCATCTGTGGAGCGGCCATTCCCCCCTCTCCCTGGCCATTGCCAGTGGCAACGACCTTGCTGTGGATGAGCTTCTGGCTGCTGGAGCCGATCCTAACCTGCCCCTCTCCTGCCGAGTGGGCAGTGCACTGTGTGCTGCCGCCAACATCCACTACAACTCTGGGCCTCGCCTGCGCAACAGAATCAAACTGGTCGAGAAGCTGGTAAAGGCTGGTGCCAATATCCTGATGCCTGTAATGGTTGGCGAGAGGAGCAGGAGTGCTACAGGAACAGCAGTGGATTATGCTTATTATATGTTTAACAAGGACCGGCGAGTTGCTCACATCCCTTACCATGCTCTAAAACAGCAAGAGAGGGAGGCCTACAACGGCCGCCGACAGCTCATCACCATGATGGCAGAGCTGATGAGACAAGCTGCCACCAGCATGGAGAAGCAGCGCCTGGAAATGAAAAGAGCCAAGGCATACACAGTGAGTGTTAGTCCCACAGACAAGTTTGTCTTTACTGGAATAGGAGCCACACCCCCTGCAGATAGAACAAGAGTGCATATAGCTATAGAGGAGCAAAGAGAATCAGCAAACGTGTCTACAGCTCAAAAGAGATCACTAAGCAAAGGTGAAGCTAAGACCTTGACTGTGAGgaAACCCTTATTTAAGTACTGTTACCAGTGCGGCCGTTCAGCGTGGGTGGTGTTGACGCCCTGTAGCCGCTGCCACGAAGTGTTCTACTGCAGTAAGACATGTAAGCTGAAGGCCTGGAATGAACGCCATAAAGAAGAGTGTGTCCGCGTGCCAGGAAGTGGACGTCCTGAGGGTAGTCATATGTCTGGTGACCAGCGGTGCCTTCTTTCAAGCAAAAGCTCCAGGAAAAGCAACGATCTGAATTTCAAATTGGATAAACCAAACTCAAGCAAGGCAGCATCATACACCTTCACACATCAGTATCACCCTCAAgaaaattacagttttatttgatTGTGTAGGTGAAAGAAAGactcaacacaacacaacagaagTGGGGAGATTTTCATTGTTACGATGAACTTTTGGATTTTAACCCAAGCCTGGGTCTTGCTGATCTTGCACCCTTCTTCCAACACACCTGACTCTAACATTCAGTTCCTCCTAAAAGTATTGATTAACAGGGATCAGGGTGTTAAATTATGTTGGAGTTAAACTTCAgttatttcatgtcattttgcgtttgattccttttttttgtaatacgCATCCATTGTATTCACAGACTCATCAGTAACTGACCAAAAAATATTGATCACTTTCCCCATGAGCTATTGACATTTAAACATAGTAGTACAATTTATCAAAAATGTCCTACGCTTAGAATTACGCAAGGTAGTTTAGGTGATATAACTCCTGTCAAGCAGAATAAAAAGCAGTAGTCAACATGATCTAATAGCGGATCATAGCTTTCTCTGTTAATGCAGAAAAGATGGTGACACTTTATCAAAAAGAGTGTGATTGTGTCTCATTCATTTAGCATCCATTCATTTCCATACAGTTCTAATCATGACATGAGAGATTCATTCTTGACCTActtatttcagttcagttaaacTGTACATTTCTATTTCACAAACTATTTCAGCCTCTTCagtgatccacacacacac

Function

GO: NA

KEGG:

id description
K24631 ANKMY1, ZMYD13; ankyrin repeat and MYND domain-containing protein 1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU213678 lncRNA upstream 245533 12850960 ~ 12851179 (+) True G180534
TU213659 lncRNA upstream 255430 12836868 ~ 12841282 (+) True G180516
TU213315 lncRNA upstream 414149 12654422 ~ 12682563 (+) True G180268
TU213314 lncRNA upstream 442497 12653796 ~ 12654215 (+) True G180267
TU213271 lncRNA upstream 534931 12543667 ~ 12561781 (+) True cdc14ab
TU213871 lncRNA downstream 24431 13136137 ~ 13203148 (+) True G180695
TU213916 lncRNA downstream 90165 13201871 ~ 13285070 (+) True G180738
TU213946 lncRNA downstream 124771 13236477 ~ 13239583 (+) False aqp12
TU214029 lncRNA downstream 187574 13299280 ~ 13302297 (+) True G180833
TU214035 lncRNA downstream 290181 13401887 ~ 13406255 (+) True G180838
XM_026930730.2 mRNA upstream 1749 13088273 ~ 13094963 (+) True hsh2d
XM_026930729.2 mRNA upstream 1749 13088274 ~ 13094963 (+) False hsh2d
XM_034308546.1 mRNA upstream 2322 13088273 ~ 13094390 (+) False hsh2d
XM_026930431.2 mRNA upstream 10781 13065988 ~ 13085931 (+) True tpm4a
XM_026930434.2 mRNA upstream 10781 13071766 ~ 13085931 (+) False tpm4a
XM_026930329.2 mRNA downstream 125292 13236998 ~ 13239637 (+) True aqp12
XM_034308887.1 mRNA downstream 166252 13277958 ~ 13280512 (+) True LOC117598427
XM_026927676.2 mRNA downstream 196735 13308441 ~ 13313447 (+) False cep19
XM_026927683.2 mRNA downstream 196965 13308671 ~ 13313447 (+) True cep19
XM_034308910.1 mRNA downstream 197142 13308848 ~ 13313447 (+) False cep19
TU213294 other upstream 494648 12573193 ~ 12602064 (+) False LOC117598398
trnag-ucc_15 other upstream 708471 12388170 ~ 12388241 (+) True trnag-ucc_15
TU213163 other upstream 763081 12328066 ~ 12333631 (+) False timm13
TU213106 other upstream 1040963 12054958 ~ 12055749 (+) True G180121
TU212683 other upstream 1667373 11428613 ~ 11429339 (+) False G179758
trnag-gcc_9 other downstream 138664 13250370 ~ 13250441 (+) True trnag-gcc_9
trnag-gcc_10 other downstream 144351 13256057 ~ 13256124 (+) True trnag-gcc_10
trnag-gcc_11 other downstream 146302 13258008 ~ 13258076 (+) True trnag-gcc_11
trnag-gcc_12 other downstream 152118 13263824 ~ 13263894 (+) True trnag-gcc_12
trnag-gcc_13 other downstream 154058 13265764 ~ 13265835 (+) True trnag-gcc_13

Expression Profile