RNA id: TU214035


Basic Information

Item Value
RNA id TU214035
length 2713
lncRNA type inter_gene
GC content 0.36
exon number 2
gene id G180838
representative True

Chromosome Information

Item Value
chromosome id NC_047605.1
NCBI id CM018551.1
chromosome length 26640196
location 13401887 ~ 13406255 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

ACACAAGTAAAAAGTTGAGAAATTTGGCCTGCTTGCTCTGCGTCCATTCCTCATATGATAGAGATGCTCCCCGGCCCCACCCTGCCATCGTCAATtcaaatttcattcatttcacattttaaatggCTCAAATTTAACCCATGAGTCTGTAGCTCATCACTGGTGTTTGAGATCAGCTTTACAGTAGATTATTACTGTATCCAATATCCTGCAGtgctgtgcagaaaaaaaacaggaagcgCTTGTCATCTGTTACACATCACAGTCATGTCTATTAAAacctgaagaggaaaaaaacaaacaaacaaacaaaaaaaaaaaaacaactctggCCAACAGTGttaaattctaaaaaataagCTGAGACTTCTATTCACAGATGTGGagtgtcttttaaaaaaaaaaaaaaaaaaacctaaaatgttGATTTTATTAGTTCAGAGGACATGTAACAAATGCATACATGTTCACTCATCCTAATGAAATCTGTACAGTGTCACCTAAACCAATGAACGTAGCACATGATCATAGGTTCAAtttaaaaggaaacacacactgtaaaataaaaatgtaaacctgATTTCCAAAGTCCCATTAAAATTATTCAATATGCAAGCACTCTACTGAgcagcctaataataataataataataataataataataataataataataataataataaaaacagctccCCAGGCCAATAATAGAATGATAAAAGGTTGCATCTGATATCACCTGCGGCTAATTTACACCATGTTTAATAATTCATCTCACTTTCAAATGAATATGAAGCCCACCTCAGCACCAGCACATAATTCAGAGGGTTATAACTGTCCTGAGAAATCAGCTTTGCAAACTTTTTGCCAACTTCTAAAAATCACATACAATTTTTTCAACTGTGCTGGTGGACATTCGGCTAATTTCAGCCTCTCTCACTGATGCCAGTGCACAACAGCAATCTAAAGCTGGTGCTGAAAGCGGTTGGTTTATTTGCAGCCCCATACCCTAGGATTAAAACTGtagaaaaatattaactgtGTACTAATCGTCTGAAAAACCTCATTAACATTTACTATAacgagaaaaaaataaaattatattatatatatatatatatatataaaaatgatgagCTTTTATAAATCATAATGTATAACAGCTGCATTGAATGAACAGGGTGGAAAAGTactaacatttaatatttggcaGTGGCTTAAATTCTGCACTATACCTTAAGCaatcacataaataaaaatttaaccATCTCTTCCAAACTATCTGGCAGATTGCATAATATCTGGGGGAAAGAAGTTTTGCATTATACCACATGGGTTTTGACtgatcaaatctgattggtcagacagtGTCGATTTATTTTCTctagcagcagctctgatgctaatgccggctgtaattcaaatcacaagtttatattagtGCCCTCGTTCTAATTTGTTAGAATATATTCGCTTTGGTAAGGAATTATGCAGGGACCTGTATGGCAGTGACTCCACATAAATGGagttacaatttaaaaaaaaaaaaacagtaatcactgtaaactggagtgCATTGATTAAAATGTGTGGTCTGGATGTTATAATCAACATTCAGCTCAATATTAATCAGTTCAGAACTTTCTGAACACTTTTCATCCATCAGCTCAGCTTCAGATGTGATGTGTTGACTCATAACAGATCTTTTATCTGTTCTCATCAGTAGAGGGCCTTAAGCCTGGTCCTGCCGAGATTCCTGGTCTCTGACAGCACAAAAGCGGATTAGTTTGCATGATTTGaggatgcttaaaaaaaaaaagatgccagGTGCCCGGTtgaatggaaaaataataataaataaataaagtccaGTACCTGTTAGACTTGGGAGATTCCTAAAATACCCAAAGTTTCAATTATTCACTTTCAATTATTAGTGTCACATGATTTTGCTCATTATTATTGCGAgcggaaaaaaaaactggtgtgTGGATTTATTACAGAAATTATGACTAATCTCCCATCATTCCTTTTCCACCCTGTTTATCTGCGCGATGAAGCGAAAAACGAAAATACACAAGCTAAGCGGCAGCTGTCAGTTTCAACATACAGTAAACTACATAACGAGTCGAAGCAAAGCGTGTCAAAACATTCCCTTCCTGCGTAACCAACCATTTGGCGACACACATTACTGCATCACCATGCAGATCTTTTACCTtctactacattttttttttttttttttttaaatacatcaaGTCATTTCCTGCTGTTATATTGTGCAGACCTCTGTTACATGGAGGTGAGGCTGGTGTTCGGAAGCTGTCCAACTTCCATTTGATGCTtatcaaaaagacaaaaaaagaaaaacattctgatagactgcaattaaaaaaaattctttgatACACAGTTCAAGGTTACCTGGCTTTAAAAACGAGGTCCGTAAAAACTGTATGCCAGTGACATTCTGGCGGGGGGGGGGGATTTTAAGGATTCATGAttgaagaatacaaaaaattTGTGGCTCTGAGGGAACAATCAGGGGGAAATACTGTGGTGAATGAAGCTCTCTCACATGACGGCACATTCTCTGGATCTGATCTTTGGATCGCCCTGAAAAAGAAACACGTTGAAATCACCAAACAGCACAGTCAAGTAACtccaataaaatataataaaacaaatactggcGTAACTGGCACATACAGT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU214029 lncRNA upstream 99590 13299280 ~ 13302297 (+) True G180833
TU213916 lncRNA upstream 116817 13201871 ~ 13285070 (+) True G180738
TU213946 lncRNA upstream 162304 13236477 ~ 13239583 (+) False aqp12
TU213871 lncRNA upstream 198739 13136137 ~ 13203148 (+) True G180695
TU213678 lncRNA upstream 550708 12850960 ~ 12851179 (+) True G180534
TU214147 lncRNA downstream 41690 13447945 ~ 13448184 (+) True G180926
TU214166 lncRNA downstream 223440 13629695 ~ 13640963 (+) True G180945
TU214388 lncRNA downstream 691405 14097660 ~ 14100987 (+) True G181136
TU214419 lncRNA downstream 739618 14145873 ~ 14293381 (+) True G181157
TU214415 lncRNA downstream 815996 14222251 ~ 14240535 (+) False LOC113531387
XM_026923575.2 mRNA upstream 4112 13379796 ~ 13397775 (+) True LOC113532271
XM_034308819.1 mRNA upstream 33629 13319943 ~ 13368258 (+) True impact
XM_026927676.2 mRNA upstream 88440 13308441 ~ 13313447 (+) False cep19
XM_026927683.2 mRNA upstream 88440 13308671 ~ 13313447 (+) True cep19
XM_034308910.1 mRNA upstream 88440 13308848 ~ 13313447 (+) False cep19
XM_026942260.1 mRNA downstream 20415 13426670 ~ 13430143 (+) True rpl36
XM_026927604.2 mRNA downstream 43204 13449459 ~ 13461109 (+) True ftsj3
XM_034308542.1 mRNA downstream 56025 13462280 ~ 13468477 (+) True lim2.2
XM_034308543.1 mRNA downstream 56025 13462280 ~ 13468477 (+) False lim2.2
XM_026924353.2 mRNA downstream 56026 13462281 ~ 13468477 (+) False lim2.2
TU214031 other upstream 96171 13301255 ~ 13305716 (+) True G180834
trnag-gcc_17 other upstream 126331 13275486 ~ 13275556 (+) True trnag-gcc_17
trnag-gcc_16 other upstream 128270 13273548 ~ 13273617 (+) True trnag-gcc_16
trnag-gcc_15 other upstream 132158 13269656 ~ 13269729 (+) True trnag-gcc_15
trnag-gcc_14 other upstream 134110 13267707 ~ 13267777 (+) True trnag-gcc_14
TU214157 other downstream 89335 13495590 ~ 13495985 (+) True G180936
TU214440 other downstream 758771 14165026 ~ 14174218 (+) True G181175
TU214656 other downstream 1155435 14561690 ~ 14562966 (+) False LOC113540185
TU214729 other downstream 1183664 14589919 ~ 14594615 (+) False ankrd29
XR_004579085.1 other downstream 1216288 14622543 ~ 14646822 (+) True si:dkey-121a11.3

Expression Profile