RNA id: TU214388


Basic Information

Item Value
RNA id TU214388
length 3304
lncRNA type inter_gene
GC content 0.40
exon number 2
gene id G181136
representative True

Chromosome Information

Item Value
chromosome id NC_047605.1
NCBI id CM018551.1
chromosome length 26640196
location 14097660 ~ 14100987 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

ATTCACTTCACATTTTAATAGAATTTATCCCATAGTTTCTGTAATTCATGAACATCTACAAACAGCAGAACGGCAGAACGTGTGATCTGGGGGTTGACTTGCCCGTTTTTGAGAGGTTACAGAGTTATTGCAAACTGAAGAAGTGAAACCCCGAGAACAGAAAGTTTTCTGCAAAAACCGCCTGTGATCTCGGTGAAGCAGTCAACGGCATCGAGTGAGCAAACAGTGCGTTTGATTACAGACGACAGGAGATGAGGAGCGACTGTCTCACATCAGAGACCAACCGAGTCGTGCTTTTAAGTTTAAATACGGAGGAATGCAACATGGAGCCTTAGAAAATCCCCACTCtgaagctgagagagagagagaatcgaAAACATAGAAGAGCGCATCGGAAGCAGATGTGGCCATTTCTTTGGAGATTTAGCGAACTAGGAAACATTTTTATGACAGCCCAATTTTCCGCCATTTTATGAGCCAAATGTAGGAGTTTCCAATGAGGGATTGTACTAATTTTACCATCCTTCTGTGTCTACACCATAAATGTACAAATGAGAGACCTAGATAGCTGATAGCTCAAGACATCATTCTTTCTACAGCGACATGAGCCACTTGGCTGCTATGCTGGGGCtccatttctgctttttttctccagaACACTAAATTTAAGTGCTGTGTTGAGATATGTAAAATGTACCTCTTCATGTAAGTGTTATTTTAAAGTCACAAGAATCACTTTTTAACTAGCACATAGTGTCTAAAGTTAGTGCTCCATTTATCTGATCAAGCCCAGCTCAGAAAGGAAGACGGCCATCTTCGGCCATTTCCATGAGTGTATGCGACACTATGGTTCTATAACAGACTCAGCTAAATTGTAagacttttttaaacaagtgcattattatatgaaaaatcatttattttgtccagaaaaaaaaaaacccaatgcatttattatgttatttataCTCAGTAGTGCATACTCCACTTTGTTGCCTATCTAGGGCTTTATTAATGTAATCTATGGTGCACACAGACATATAATTATAGACAACATGAATGCGCAAGATGGCAGATAAgtgctttgtggtttttaaGGTTATATGGCTCAAAGTTTAATTAGCAGTAGTACTCACAATGTAGCTCCCATTCAGTTCATTACAATTAATTTACAATTATGGGaaatttcctgtttatttattttttcctgaacGATAATCTTTTAAATCCACTGCACAGTTCAGGACTTATTTCAGTAGTGGTCTGTTGATGTGGGGAAGATATGACTACGCCCCCATGCACATGATATCACCACTACCTGGTCCAGCAGCAATTTCCTGCTAGAACTGATTTAGACGGCCGAGAGCTAGCTCGTTTTTCGTGGATTGCTACGGTTCTAGATCTGAAACCAGCACCGTGTTGGTCATCAAGATTTCATGGTGCTGCTTTTGGATCTAGAGCTGTAGTTTTCATGACCTAAACATGCCCAAGAAATTGCCGGCTTTTAGCAGAAGGATGAGGAAATGGAGAAAAGAGAATCTCTCAAACAGCTCTGAGCTTGTTGGGGAAATTTCGACATAACACTGCCTTATTCGGAAACTCTTTGGCTTGCCAGGCTGTCTGTCACCATCTTCtattggagtgtgtgtgtgaacatgtgtgtgtatatgtggaaCTCAAACGCACCATCCaagtgtgagacagacagaaagaggtaTAAAAAGATACAGGACATAGTAAGACGTTCCTAATGTATATGACACTATAGGACTCTATAATGTATAGCTCTATAATGAGCAGGGCTTATGGTATGTACAccatgtgtgcgtgcgtgtgcgtgtgtatatatgggtgtgattcaAGGCCTCTCAGACTTTTGTAGCACCTTGAGAAAGCCTGATCACAACTTTAACGCTAATCGTATACAGGGTTTTCCGAGCTACTCACGTTTATACAAAAAAGGTAACCTGTGCTGCTATTCTTTTCACGTGAACTTTTCACCAACATGGTTAAGTACTATAGAAACTAGGGATGCACCGATGATACGGCGGATCAGTATCATGCTGACGTTGGCCTAAACAGTGTCAGATTCCGATCTGTCCATGAATGTACGATCCTGACTGTCAGTTTTCTTCTTGGTATTCACAACAGCTTTTAATTTAGCATCATTAATTTCCCTTGTTAAATTAAAGGCATAGttcgccaaaaaaaaaattaaacgtaTGCAGTGCTCCACCTCAAGTGTTTTCGATGTccaatattttcttatttagcTGTGTGCTGGAGCTACCAAGCAGATAGTAATGGAAACAAGTAATGGACGTTTATCTCACACAAAAAatcccaagtggtgcaacagaaaaaaagttcACCTTATTGCCGGGAGATCACAAATTCGAATCGCAACAATGCCTTGTCTAGGAGTCCAAGAgggcaaaactggctgtgctctctgggtgggagagatGGTATACTCAATCTcccgtcaatcacagtgacactagccaatcataagCGTCCGTGAGCTCaggtatgcagaagagggtggatagtgctttcctcagagtgtgttatgctgccctgtgatgcagcatgagcagcaattcTCAGTTATTTGTGCCCCAGAataagcatgtgttagccttcagcCTCCCTAGCTGGTAGCTGTCACATGATAGGAAGTGCTAGCcagaaaacagtgttttaaaatttacGTAGATTTCGTAGCTTAGTGAGTTCTTCTGAAGCTAGTACATAAAGATTTGGTcatgtttcacagacattaatTTGGGTGAGATAGACATCCATTAGCCAGatacttcagacaccaaacatgtcttagcTGATTGATTAGGGGTTAAACTGGGTACATTTTTTGTTCCTTAAGTAGATCAAAATCTCAAAGATAATAATGACAGGAGGGGCATCCTTAcagaatcagaatcatatcatcatatcgaAATATGAGATTGGTGCGTCCCTGCTAGAAACGATAACAACAGCTAAAAGACAGTGATCATAATAAAAGTGGACAAAGTGAACAAGAAAGCCCATACATAATCAAGtctacaccttttttttttgttttgtttttttacgaAGTCTGCTACAAAACAAGCCCAGACACCCGGCACTGAAAATACACCATGACGTATCGATTATAAGCGTTAACAAGAATTCTTAAACACATCACCTCTACACCGACTCTCAGGCAAAAGAGTGGAGCATCTAACGGTGCCGTATTTactttatacaaataataaatctatGTGTCAAAGACATTTAAATACTTGAGTTAAACCCC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU214166 lncRNA upstream 456697 13629695 ~ 13640963 (+) True G180945
TU214147 lncRNA upstream 649476 13447945 ~ 13448184 (+) True G180926
TU214035 lncRNA upstream 691405 13401887 ~ 13406255 (+) True G180838
TU214029 lncRNA upstream 795363 13299280 ~ 13302297 (+) True G180833
TU213916 lncRNA upstream 812590 13201871 ~ 13285070 (+) True G180738
TU214419 lncRNA downstream 44886 14145873 ~ 14293381 (+) True G181157
TU214415 lncRNA downstream 121264 14222251 ~ 14240535 (+) False LOC113531387
TU214510 lncRNA downstream 259801 14360788 ~ 14361372 (+) True G181233
TU214515 lncRNA downstream 274506 14375493 ~ 14379473 (+) True G181236
TU214531 lncRNA downstream 308735 14409722 ~ 14410077 (+) True G181252
XM_026946151.2 mRNA upstream 584786 13496678 ~ 13512874 (+) True gipc3
XM_034308542.1 mRNA upstream 629183 13462280 ~ 13468477 (+) True lim2.2
XM_034308543.1 mRNA upstream 629183 13462280 ~ 13468477 (+) False lim2.2
XM_026924353.2 mRNA upstream 629183 13462281 ~ 13468477 (+) False lim2.2
XM_026927604.2 mRNA upstream 636551 13449459 ~ 13461109 (+) True ftsj3
XM_026927615.2 mRNA downstream 82232 14183219 ~ 14187331 (+) True ticam1
XM_026940367.2 mRNA downstream 88274 14189261 ~ 14203732 (+) True timm44
XM_034308961.1 mRNA downstream 88465 14189452 ~ 14203732 (+) False timm44
XM_034308826.1 mRNA downstream 121231 14222218 ~ 14240541 (+) False LOC113531387
XM_034308824.1 mRNA downstream 121232 14222219 ~ 14240541 (+) False LOC113531387
TU214157 other upstream 601675 13495590 ~ 13495985 (+) True G180936
TU214031 other upstream 791944 13301255 ~ 13305716 (+) True G180834
trnag-gcc_17 other upstream 822104 13275486 ~ 13275556 (+) True trnag-gcc_17
trnag-gcc_16 other upstream 824043 13273548 ~ 13273617 (+) True trnag-gcc_16
trnag-gcc_15 other upstream 827931 13269656 ~ 13269729 (+) True trnag-gcc_15
TU214440 other downstream 64039 14165026 ~ 14174218 (+) True G181175
TU214656 other downstream 460703 14561690 ~ 14562966 (+) False LOC113540185
TU214729 other downstream 488932 14589919 ~ 14594615 (+) False ankrd29
XR_004579085.1 other downstream 521556 14622543 ~ 14646822 (+) True si:dkey-121a11.3
XR_004579090.1 other downstream 607940 14708927 ~ 14711727 (+) False pdzk1ip1

Expression Profile