RNA id: TU214515


Basic Information

Item Value
RNA id TU214515
length 1165
lncRNA type inter_gene
GC content 0.47
exon number 5
gene id G181236
representative True

Chromosome Information

Item Value
chromosome id NC_047605.1
NCBI id CM018551.1
chromosome length 26640196
location 14375493 ~ 14379473 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

AAGAAAatcgtttatttaaaaaaagtgcaaataacCTAAAAATGATACACTCATCATTTTTCCCCCTCAAGACATCATGGCAATAATCCAAACTccatttaatttagttttaccTGTGACTTGGGTGGGAATTGGAGAAGCCGGGTAGCagcagtagaaaaaaaaaatccagggcACGGCTAATATCTCATAGGATTAATTTATGATAGAAACCAAAGGGGCGCAGCGGTGGGAAAACAATCCTCACcaactgaactgaaataaaaccACAGCACACCCTTACTCTATTGTCCTGGTTGGGTAGTTAGAGCCCACAGAAAGAGCTTCACTGAGTGGGGGAGGATCAGTAGGTTACTTCTAAGATATGCTCGAAAGCTCTGATGCTGTCTACAACTCATCTTTAGTAGCCTTATCTTGGTCATCTTCTTCATCGTCCAGCAGATTGGGCTCCTCTGGAGTTTCCTCCTCCGTGACCTCTTCTGGTTCGTCTTCCGGTTCATCGTAGCCTTCCTCGTCACCTTCGCTTTCCTTCTtgttcttctcctcctcttccctctgtttcctctcctcctcttcctgcttATCCTTCATCTTCTTCTCTGGGCCCTTTGTGGCTCCCCATGTCTCTTTGCCGATATCCTCTGCCTCCTTGACGTCGTCAGTGATTAGGAAGTTATCAAAGATGGTACCGGATTTCACCTGCCACAGGTCCAATCCGATAACTCCAATGTTGTCATACTTGTAAACTGAGTTATCTGGTGTGTAATCTGGGTTGTCGATCTCAGGATGCTCCCACGTTCCTTTGTAGTTGGGATTGTTGATCTGCTTAGGTTTCCATTCACcCTTGTACTCGGGGTTAGGGATCATGGGTGGCTCCCACTCGCCGTCCATGTCTTCATCCCAGTCATCGGGCTTCTTGGCATCAGGATCAGGAATGTTCTCGGGTTTATCCCAGTCCTCTGGTTTTGTGTCCTCAGGATCGTCAATTTTGGCACGGTCGTCCCAGTCCTCTGGCTTCTTTGCCTCTGGATCCTTGATCTTTTTGGGAGGAAGGAAGTCCCAGTCCTCCTCCAGAGAGCCTGACTCCACTTTCTCATTGTTGATTTTCACTTCGTAGGTCTGGTCGGGCCGCAGGATCAGCGTGTACAGGTTTGTGAACTCATCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU214510 lncRNA upstream 14121 14360788 ~ 14361372 (+) True G181233
TU214419 lncRNA upstream 82112 14145873 ~ 14293381 (+) True G181157
TU214415 lncRNA upstream 134958 14222251 ~ 14240535 (+) False LOC113531387
TU214388 lncRNA upstream 274506 14097660 ~ 14100987 (+) True G181136
TU214166 lncRNA upstream 734530 13629695 ~ 13640963 (+) True G180945
TU214531 lncRNA downstream 30249 14409722 ~ 14410077 (+) True G181252
TU214585 lncRNA downstream 57902 14437375 ~ 14438009 (+) True G181300
TU214732 lncRNA downstream 243163 14622636 ~ 14622971 (+) False si:dkey-121a11.3
TU214730 lncRNA downstream 268142 14647615 ~ 14649626 (+) False si:dkey-121a11.3
TU214795 lncRNA downstream 285228 14664701 ~ 14665064 (+) True G181475
XM_034308659.1 mRNA upstream 16626 14343239 ~ 14358867 (+) False cers4a
XM_026919990.2 mRNA downstream 3984 14383457 ~ 14390553 (+) True c11h19orf44
XM_026917247.2 mRNA downstream 83715 14463188 ~ 14469987 (+) True atcaya
XM_026930928.2 mRNA downstream 93869 14473342 ~ 14477751 (+) True mibp
XM_034308400.1 mRNA downstream 94818 14474291 ~ 14477751 (+) False mibp
XM_026923484.2 mRNA downstream 102084 14481557 ~ 14487812 (+) True mydgf
TU214440 other upstream 201275 14165026 ~ 14174218 (+) True G181175
TU214157 other upstream 879508 13495590 ~ 13495985 (+) True G180936
TU214031 other upstream 1069777 13301255 ~ 13305716 (+) True G180834
trnag-gcc_17 other upstream 1099937 13275486 ~ 13275556 (+) True trnag-gcc_17
trnag-gcc_16 other upstream 1101876 13273548 ~ 13273617 (+) True trnag-gcc_16
TU214656 other downstream 182217 14561690 ~ 14562966 (+) False LOC113540185
TU214729 other downstream 210446 14589919 ~ 14594615 (+) False ankrd29
XR_004579085.1 other downstream 243070 14622543 ~ 14646822 (+) True si:dkey-121a11.3
XR_004579090.1 other downstream 329454 14708927 ~ 14711727 (+) False pdzk1ip1
TU215983 other downstream 1875590 16255063 ~ 16255852 (+) False LOC113532318

Expression Profile