RNA id: XR_004579085.1


Basic Information

Item Value
RNA id XR_004579085.1
length 6327
RNA type misc_RNA
GC content 0.46
exon number 9
gene id si:dkey-121a11.3
representative True

Chromosome Information

Item Value
chromosome id NC_047605.1
NCBI id CM018551.1
chromosome length 26640196
location 14622543 ~ 14649685 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TCTCCTGAGCAACACAGGAATCTTAACACATGTGGAACTTCAACAGTCAGACTCAGTCCCACGCACACCGTAGCTCATGGAGGAGGAAAGTAGACAGGGCTAGCAAGGGAGAACAGTCAGGAGGCTAAAGTCATGTTCTTAAGAAGTGGGAGTGTTCAGAGAAACTCAGAGAACACTCTCTTCACACTTGAGCCGCCTCCAGAACAGCTGGAACTGGGCTGAACAAGAAAagcagagaaacagaaacagaaaaaacaagaagGGAAAAGCTACTTATGAAAGAGACTTAAAACAGAAATTGGACCGACATGGCTGTTTAGATGTGAATATGTGGCATGCTTGTTAACTGACTTTCAGATGGAGGTCAGCATAAAATGGGCTTCATACGTCAATGGGGAGAATGAGGGTCTATAACGCTCACCTGACTCTCTGTGTGGGCCATGGAGGACGTGGTTGTGCCTGAGGAGGGCAATGCTATGGCTGCTGACTCCCACCCGGTGGACAGATCAGACCAGGAATCTGAATTCCAGCCTCCATTGAGTCCCACCCATGTGCTCAGATCTGTCATTTCCTCTTCTCTAAGCTCCCACGCCCAGCTACCCCAACATGCCTCTGCAGTTTCAGCCCTGCAGTCCAAGATGAAGGCTCGCTCAGAGCGCAAAGCAATCTGGAAACAGCCTTCTAAAATGAAAGAAGACAGGAGAACGGTACCTGGGTTCTACATGTCAGCATGCTCTCACACAGGTGCCTGGGgattcagcagcagtgatgaAGACATGGAAGCTCGTGCTGAGGATTTAGCCATCCACACTGTTGAAGATAAAAGCATCATCACTTCCATGGGACATGGAGAAGCAGTATTTCTGGAGAACATCACAGACAACATCTGCAATGCCAAACAAGATTTTTCCTTGTGCCGCAACAAACCATGGACTCCTCCCAAGGGCTTTTGGAGGATCGCCAGGCAAGAGCCTTTGCTATCAAATGGAGGTGATGTTTCAGAAAGAGAGGAATCTAAAAGTGGGCTCATGCCCAGGCACACAGCTCTGAGGACAGATCCCAGTGTTCAGGAAGAGATTAAAAGGTCAGACAGTGCAGAGAGCCATCCTCAGAGCTGCAGGCCGAGTGACTCAGTAGCAAAAGGAAGCGATCTGTGGCGTGCTGAGAGTCTAGAAAGCATCTGCAGCAGTGGAAGCTCTCTCTCACTAGCAGAGAAAGTGGAGATAAACCGAACCATCCTCAGACAGATGCTTCAGAAAGCCCAAAGGAAGAGCGGTGAGGGGCAACAGGCTACAATTACTGATCAGAAGATGGAGAATACACATAGCAGAGGTGGGCTGAATGACAGTGACTGGGATTCTGGGATTTCTCTTCATGACAGTGAACAAACTCAGAGGCCCTTTGTCTCAGGCGCTGAGTTGCCGCTCAGTCCTCGCCATGAACAGGCCAAACAACTGCTAGAGCGTGCTCGCATGAAGGCCCGCTCAAACCCGCTCAAAGCTGACCACACCATCCTACCCGTCCAGAGGGACAAGCCggAGCTGCTTTCCTGGGTCGGAGCACCTGTGCAGCAGGCTCCTCTTGTGGGTACGGAACGGGTGGTGGTTGGCTCCGGAAATCTCAGTGATTCCTCCAGCAGTGACTCGACTGGAGGCTCTCGTCGCCGTCGAACGCATGGGCAGTCTCCAACGCGTGTGCGTTTTCaagatgagacagagaaagacgcTGAAGTGCGGTACTTGGAGCGGCAGTGCAAACGAGTTGGAGAGAGGGCACAGGGACTGCTGGGAGCCAAACCCAGTTTGGCAACGTACATCAACAGCCAGAGACCCGAGGACAAATACAAAAGCAGGAGGAGTCAGGAGGACTTACCCGACATTAATAGTCATTATGAACCCGCTACCATGGGTCAACAGTGCAACTCTTGTGGAACAATATTGGATGGAGATTTTTCAGACCCCCGCTTCTTTCAAAAGCAACCATCACCTGCTAACGGAGAATCTGAGGGAAGGACTGTGCCATGCTGGGTTGCACCCACACTGCCTAACCGCCTGGTGCGAATAGAGCAGATTAAAGAGACTTACATAGGTGCCATGAGCCCTGTCATTGTTGAGAGCGATGGCACACACTGTAGAGCCACAGGCAGTGTGGGTAGTGGTAGAGGGACTCTACagaagcagaaaagaaaaagtcgTAAGAGGGATGGCAGTCCCGAGATAAGGGCCACTGCTGCCAATGGGCTCAGAACACCAGGATCACCAAGCATTTCCAGGAACACACCCATGTCTAATGGAGCTATAGCTCTACCCCCAAACCCATATGCCCTAGATTCTCTAGAGATAAAGGTGGAGGGAACATGTAAGTCTCTTTCTAACTTTAAAGCCTGTGTGCCTTCAGTGGCCTCCAGAGGAGAAGTGCCTGGAGCTCAATCAGTTCCTGGGCTCCCTCAGCCTGTTTCGCCGCCTCTTCAGCCCAAAAAATCTGCTCTGAATTTGGACAGTCCCAGTGGCCAGCGAGTCATGCCTTCTCAACACCATCATCTCATGCACATAGACATTGTACAAGAGGGTGGGGAGCAATCAAATTTGGAGGGTATTCCTCAAGGAAACCCTGATCCTCAACAAACCACTTTGATATCTAAAAACTCCATCATGAAGGAACTAGCAGGTAGCAACAGTCATGGCCAGAGAACCATAATACCAGGGCAACATGGTTCCCAACAAGCAGGTTTGGCACAGGACCAAATCAGAGTGGAGGTAGCAGCTAGCCCTGCCAAAACATCTGTGAATAATGGACATGTTCAAGGACCTATCAGGGCCGAGGAGCAAAGGGAGGACAGCTCAAGCCCTTCACCTATGACCTCTGACCTCCGGCTGATCGATCGAAACATGACCCCAGAAGCTGAGCAAAGGGAGGGTAAAGCTCAGCAGGCCCTGCGCCGCTTCTTTTCGGCCATGGGTCTGAATGCAGGAAGACGGATTAGTAAGAGTCACTCCAGCAGCATGGAGCAGCTCGGCCCGCCACTCAAACCCAGAACAAACTCCTCAGAAACCCCcagccacccacacacactaaagaAGGCACCCTCGCTCCAGAACCTCCGTCTGGCGTCTCCCTTCTCTCAGCTGAAGAAATCCTCCTCAGTGCAGAATCTCCAGTCTCCCAAGAGGAAGCCGGAGCGCTCTACTGTATATACACCAGGGGAACGGCCCTGTAGCCCCGCCCTCTCCAGGTCCATGCACGCatgcgcgcacgcacacacacacacacacacacacacacacacacacagatacaaacacagacTAAGTGTAGTGTACATCTAGTACACGCCCATTACGTCATTCGTCTGGCTCGAGTCACAACTATGTTTAAAACATTCCACACAGGCTGTTTGTTCTTCCTGAAACTGTCCATGCTGCAAATGTGTGAAAGCTCCTTCTGCTGTCCTTATCGGCGAATAACACTGCTTATAATGTCACAATGTTGTGAATGAAGTGAGCGTGAAGCATGGCATTTTGGCAGCGTGTGTATTCCTGCCAAGCAGCTGGTGTGTTGTGCAACGGCCTGCATACTTTTCCCTGACTGAGACCCCAGAAGTTATtgcatcagagagagagagagaatgtgtgttaaAGAGACAGAGTTAAATATAGAAGTGTGTAAGCCTGCCAGAGACAGAAAGGCAGGAGTGAAATTTAACACACTGTCTGTGTCTCAGATGTCATACTTATATAGGCTACTACTCTAAACACTCATACACAGGGAGTGTCCATAACTGTGTTAACACAAAGTAATACAAACAAGTATTACTAGTACAGTATAAATAGACTGACAATGCTGCCAATTCTGGGGAAACTAGCTAATGTCTGCTCAGAACTTCACTGGAAGTCGCCAGGTGACTATTTTGGATATTCATTGTATTGCCATGATTATCTGCATATCAAAAAGTGTCACActaagaagaaaggaaaatttTCTAAAGACATGTAGAATATAGTTTAATCAAAATAGAAAATCACTGATTATATTTCTTCTAGAAAGAAGTCCTCTTTGGTCAAGACACTACAAAATaagtatttacatatttacagaaTACTATAATTCCTATCAAGAATGCAGACAAACTGAAGAGGGAGAATCGGGTAATAGACACAAAGTAAACAGTTACAGATggaataactcacttttatttCGAGTAAATATCACCAGGAAGACAGTTGTGACTGGTTATTGGgaagtgattggttgttgggaacaatggtgatcagtgattggttgttgggaacaatgattatcagtgattggtcactgggaacaatagtgatcagtgattggtcatttaGAACAATGGTGATGAGTGGTTACTGAGATCAACATTGATTAGTggttggtcattgggaacaatagtgattagtgattggtcgttgggaacaacAGGGAGCAAGAACAACTCAGTGTATGTACTGTGATGTAAGCTGGAGAGCCGTATTGAATGCAGGACAGTCACTACCGTCTCGAATTATGGCTaggatattttttatatataaatttgttaaagtaatctaaaaagtcaccaaatTTCAACCAGTCCACCAGTCAAAAAGGCTAATAACTATAGGAacttgataataaatataataacattaatgaccCCAGGGTGTCCCTGGACCAAACTTTGAGAATAACTGGAATAAGCTAGCTTTTTACAATGAGGAGTGGTCACTGCAGTACATTAGCTAAATAGAAATAGCTAGCCGTCTCATAGCTCTATAAATTaagttattaaataaatctagATGATTAAAGTTACACAGAATGGTTATAATTAGTGTAGCTAAACATAAATTCCTAGACTGGATAGCCTAGTTAGCTCCTACAAAGTTAcggattaaataaaataaggtatTACATACataacctagctagctaaaaacCATGTTTAAGGGCCCATTTGTAAAGATGACATGAGGGAGGACCTCCTAGTTGGTGTTGCTGCTTCTGTCTGTGGTTACAAACTGGAAGTGTAAATGAacgttgcatttaaaaaaatatataaatacacacagcacagcaaacACTGTCTGCAAAAGGAACACAGCAGTGTTTTCACCCTGAGTTACTTTAAACTAGCAGTGTTAAACAGTTGCTTTCTTCATTAGCGTACTGTGTTTCTTGGAACAAAATATATGCTGATTCAGAAAGCAATAGAAAATTGTTTGATTGGGGTTATCTCTCTGAATGTGAATATAATGATGAGAAGCTGTGACAGACGGAGAAGAATAGAAGATGGAGGGAATGTGACCTGCCGAGGCAGGCAGAAGGTGCAACAGACGGAGACTGGTGGTGCAGATGTGGTCTTTGCCAGGTTACTCTCACCAAGCCAGAGTGTTTGTTACTGAGAGTGGAATCTGCTACAACCTTACATAGAACAAGTCTGTTGACCACTTTGAATCAGTGACAAATGATTCCACTTGTTTGAGTCCTCTTACTGTTAGTGCAGATTTGAAAAGCAAATACAAATTGCTTTACCACTAATGTTATTGCTAGCTTTTGTATCTAAGTAGCTTCACACAAATTCTTCTCTCTGAAGTCCCATCTCTGAAAGGATGAATTATACGGCTTTTGAAGTGGGTATGACTAAGAATTCATGAAAGtgttctacaaaaaaaattttgtatAAATGTGGTGGAATTTGATGGaacagctgcccttagacttccattatatgTACATTTCAAGTAAATAGAAAAAACACTGGTATTCCTATAAACTAGCAAACATCAGGTAGCACTGAATTTAGCATAATTTTTCTGACAATTTTAGGAAAGTAAGTTCTATGTACTAATATTCTAGATTGCTAGTCAGTAGTTTTGTGTAATGTGCTATTGACACAGTCTGaaaatgtgctgtgtgtgagatATTGCAGCCAAAGTGATGATTTGATTGTgtctatgcgtgtgtgtatgtatgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgcgtttcaATGGTCAATTAAGGAGGACAGAGCAGAAATTCCAGTAAGGAGTTACAAAGCCAGGCTGCAGGTTACATCACCTTCCCTGAGTCAGTCAGAGAGGCGGCCGCTATAAACAGCTCAGACGTGAGGGGGAGACGGTTGGACAGACGGAGAGAGGGGGAGGGtgaagataaataaacagaaatctgaggaGgggtctCCAGCGTGCACTGAGCGTAGAGGACGTGGGCAGCCCCAGTGCTATGCGCTCAGTGGGTAGAGTCGCTCAGGCGTTTCCTGATGGGACATTTCTGTTAGAGCTGAACCGGCCTCCAGAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU214585 lncRNA upstream 184534 14437375 ~ 14438009 (+) True G181300
TU214531 lncRNA upstream 212466 14409722 ~ 14410077 (+) True G181252
TU214515 lncRNA upstream 243070 14375493 ~ 14379473 (+) True G181236
TU214510 lncRNA upstream 261171 14360788 ~ 14361372 (+) True G181233
TU214415 lncRNA upstream 382008 14222251 ~ 14240535 (+) False LOC113531387
TU214730 lncRNA downstream 793 14647615 ~ 14649626 (+) False si:dkey-121a11.3
TU214795 lncRNA downstream 17879 14664701 ~ 14665064 (+) True G181475
TU214912 lncRNA downstream 221105 14867927 ~ 14930862 (+) True G181588
TU214923 lncRNA downstream 314063 14960885 ~ 14977551 (+) True G181599
XR_003403448.2 lncRNA downstream 347866 14994688 ~ 15002233 (+) True LOC113533733
XM_034308982.1 mRNA upstream 10978 14600430 ~ 14611565 (+) True LOC113527219
XM_026927929.2 mRNA upstream 22564 14589880 ~ 14599979 (+) True ankrd29
XM_034308502.1 mRNA upstream 59533 14561555 ~ 14563010 (+) False LOC113540185
XM_034308501.1 mRNA upstream 59533 14561556 ~ 14563010 (+) True LOC113540185
XM_026936524.2 mRNA upstream 59533 14561573 ~ 14563010 (+) False LOC113540185
XM_026917034.2 mRNA downstream 24059 14670881 ~ 14672730 (+) True ier5
XM_026928780.2 mRNA downstream 49761 14696583 ~ 14704088 (+) True tal1
XM_026920401.2 mRNA downstream 62105 14708927 ~ 14711727 (+) True pdzk1ip1
XM_026945146.2 mRNA downstream 191675 14838497 ~ 14849100 (+) True tm2d1
XM_034309004.1 mRNA downstream 403360 15050182 ~ 15075928 (+) False frem1b
TU214729 other upstream 27928 14589919 ~ 14594615 (+) False ankrd29
TU214656 other upstream 59577 14561690 ~ 14562966 (+) False LOC113540185
TU214440 other upstream 448325 14165026 ~ 14174218 (+) True G181175
TU214157 other upstream 1126558 13495590 ~ 13495985 (+) True G180936
TU214031 other upstream 1316827 13301255 ~ 13305716 (+) True G180834
XR_004579090.1 other downstream 62105 14708927 ~ 14711727 (+) False pdzk1ip1
TU215983 other downstream 1608241 16255063 ~ 16255852 (+) False LOC113532318
XR_003403746.1 other downstream 1933414 16580236 ~ 16580303 (+) True LOC113537281
TU216336 other downstream 1936481 16583303 ~ 16584943 (+) True G182819
TU216450 other downstream 2266436 16913258 ~ 16922922 (+) True G182877

Expression Profile