RNA id: TU214912


Basic Information

Item Value
RNA id TU214912
length 2287
lncRNA type inter_gene
GC content 0.37
exon number 2
gene id G181588
representative True

Chromosome Information

Item Value
chromosome id NC_047605.1
NCBI id CM018551.1
chromosome length 26640196
location 14867927 ~ 14930862 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GTTGCATATcaagctgtttattttcctgcatGGAATGGTGAACACAAAAAGATGCCTAGATGCATTTATAATAGGGGCATCCTTTGGCTGTCTATGTCATTGTCTTCTGCctaaaactaattttaaaatgcataaaaacgCTCTCATTTCTTACCAACATCCTCAGAATTACCTAAATTTAGCTTCATCAACACTGATGCAACAAAGAACCTTCAAAACATACAGCAAGCATACTTGTAACATCCATTTACAATGGGGCTTTCACCTCAATACCTTATACTTTTCAAGTATAGGAAATACTCTATACCAtcaaaagaaggaaaaaaacaaaaatgtctttaaatacatacaaaaaggaaagcaaaagaaaacaaagataaatcagGAAACAGGAAAGTTTTCAACTTAAATCCAGTTCCCcagagaacaaacaaacaaacaaacaaacaaacaaaaaaaaaacagttctattAATGTGGCCTTATTACAAACGATGCAAAAATTCACAACACTAGTTTTTCCTCATTTAATCAATGTTACAAAAGTCCTGCATTATAAAATAGGGCAGCTTTAAAATCAgtgtaattaataaaactatacaatatacaaacAACAGATCTCCCATACTCAGCGGCGTCCTAGTCCTAGCTCTCTTCTCGATTTCAATTAGATTTGTTCTTCTTCTCCCCAAAACTCTATGTTTGTAAcccccctccaaaaaaaaataaaataaaataaaataaaccacaaaacaaaacaaaacaaaacaaaaaaactaactaaaattacacacacaagaacAAAACAGACTGCCCAAGctattgcttttatattttttctctttttttgtctttctttaaaaaggGTGCAATTTTGTCATTATcttacacacacagccagatgATCCTGCTGATTAGATGCTAGGCTGCTCTAAACTAAACTAAGCttctgtgacaaaaaaaaaatgtccgtGCAATCAATTTTTTCCCTTTGCTCTTTTAAGCCCtggaagctgtttttttttttaaatcctcatGACTGTCATTCTTTCATATTTAGTGCAGATAATTAAGGAAATAATGCCCAACTCATTACTAAAGGGTAGGCAaagaacaatgaaaaaaaaacaacaacaaaaaaaaacctgacatactaatgaaaaaataatagaaaaaagaaagcacacacaATCCACACACGTGTAACCACTAAAACGCCATATCAGACACCTGGAAAATTTtctccatatttttttcttaaatgatatactgtatatggaatAGACAATAAAACAGGTTATTATGGAAGATCAACATGTACATAAAATGggcattttgtaatttattaaatgcTTAAATGCATGTACGTTAAACATTGTTGTACTGGAGAGGAAGTTTCCTTAAGGCTTGTTTGTGaccaaaatgaaaagaaagaggaagtcTAATAAGTGAATGGTCATTTAGGTCAAGCGCAAAGAAAGTAGAATACCTAAACACGACTGGTAAAGAGTTTTAAGAAGAACTCAAACAAGATTATCTTGCCTTTGCAGTCcatcaacttttcttttttcaacataTTGTGTAGGTCTCTACACTGGGAGATACATTTTGGGATTTTGAGTCtatcactgaatcacactaaaGGCGAACGCGCCCGATGCATTTCTGATTCGTTTTCAGACAGGCTTTGCCTGGAAAAAACTCCCTCCTCGGAAAGCTGAATAACAAACACTACTGACATAGAAGTCAAATCTGGGATCATTTAGGAAAGTACAGGGAACTGAAATGCGCCACGCTCTCCATCAGGAACACAGACTCTTGACTTGTCACTGTGGGCCCTATGAGATAAACAAATCCGCTTCACATAAATAAACAGCGGAATAGCATTTGCACCTGGCATGAAGAGAACCTGAGTGGTGAGCCACAGACACCGTGCCATGTGGGCAGAGAGGCCTGACCCTTCATCCCCCCAGCTTAGAAAACCAAAAACGAAAGCCTCAATGGTCTTGGCAGGACAACGGTAGAGAAAAAAGACACAGCAATTCACTTTGGCAACCAACTttcacctgtacacacacacaaacacacacactttctgtttgCTCTCTTTTTCAGAGAACGGCTGGCTGCAGTCTGTAACACACTGGAAGAGTCTTGCCAAGGCGGATGAGAGCACCAACACTGTGGTGCTCTCCAAGTCATTTCTCTCCCGTCGTCGTCTCTGCCTGCAGAACCAACTCAGGGCACTTACAAAAGTGCCatggaaaaatacacaaacacacataaaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU214795 lncRNA upstream 202863 14664701 ~ 14665064 (+) True G181475
TU214730 lncRNA upstream 218301 14647615 ~ 14649626 (+) False si:dkey-121a11.3
TU214732 lncRNA upstream 244956 14622636 ~ 14622971 (+) False si:dkey-121a11.3
TU214585 lncRNA upstream 429918 14437375 ~ 14438009 (+) True G181300
TU214531 lncRNA upstream 457850 14409722 ~ 14410077 (+) True G181252
TU214923 lncRNA downstream 30023 14960885 ~ 14977551 (+) True G181599
XR_003403448.2 lncRNA downstream 63826 14994688 ~ 15002233 (+) True LOC113533733
XR_004579076.1 lncRNA downstream 63826 14994688 ~ 15002233 (+) False LOC113533733
TU214970 lncRNA downstream 155039 15085901 ~ 15086320 (+) True G181632
TU215238 lncRNA downstream 362376 15293238 ~ 15294067 (+) True G181851
XM_026945146.2 mRNA upstream 18827 14838497 ~ 14849100 (+) True tm2d1
XM_026920401.2 mRNA upstream 156200 14708927 ~ 14711727 (+) True pdzk1ip1
XM_026928780.2 mRNA upstream 163839 14696583 ~ 14704088 (+) True tal1
XM_026917034.2 mRNA upstream 195197 14670881 ~ 14672730 (+) True ier5
XM_026920060.2 mRNA upstream 218242 14622543 ~ 14649685 (+) False si:dkey-121a11.3
XM_034309004.1 mRNA downstream 119320 15050182 ~ 15075928 (+) False frem1b
XM_034309001.1 mRNA downstream 119327 15050189 ~ 15079767 (+) True frem1b
XM_034309000.1 mRNA downstream 119327 15050189 ~ 15079767 (+) False frem1b
XM_034309003.1 mRNA downstream 119327 15050189 ~ 15079767 (+) False frem1b
XM_026913598.2 mRNA downstream 119727 15050589 ~ 15079767 (+) False frem1b
XR_004579090.1 other upstream 156200 14708927 ~ 14711727 (+) False pdzk1ip1
XR_004579085.1 other upstream 221105 14622543 ~ 14646822 (+) True si:dkey-121a11.3
TU214729 other upstream 273312 14589919 ~ 14594615 (+) False ankrd29
TU214656 other upstream 304961 14561690 ~ 14562966 (+) False LOC113540185
TU214440 other upstream 693709 14165026 ~ 14174218 (+) True G181175
TU215983 other downstream 1324201 16255063 ~ 16255852 (+) False LOC113532318
XR_003403746.1 other downstream 1649374 16580236 ~ 16580303 (+) True LOC113537281
TU216336 other downstream 1652441 16583303 ~ 16584943 (+) True G182819
TU216450 other downstream 1982396 16913258 ~ 16922922 (+) True G182877
trnak-cuu_26 other downstream 2099010 17029872 ~ 17029944 (+) True trnak-cuu_26

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
rainbow trout (Oncorhynchus mykiss) TU123615 False 752 lncRNA 0.39 4 NC_048566.1 5780214 ~ 5782921 (+)
rainbow trout (Oncorhynchus mykiss) TU473215 True 5223 lncRNA 0.43 6 NC_048569.1 55546225 ~ 55581036 (-)
eurasian perch (Perca fluviatilis) TU123615 True 6098 lncRNA 0.40 2 NC_053120.1 284398 ~ 290696 (+)
bowfin (Amia calva) TU123615 False 3343 lncRNA 0.49 3 CM030132.1 13834517 ~ 13840231 (-)
mexican tetra (Astyanax mexicanus) TU123615 True 409 lncRNA 0.43 2 NC_035906.1 19382906 ~ 19389270 (+)
mexican tetra (Astyanax mexicanus) TU56886 True 3429 lncRNA 0.36 3 NC_035901.1 13095821 ~ 13099379 (-)