RNA id: TU214970


Basic Information

Item Value
RNA id TU214970
length 420
lncRNA type inter_gene
GC content 0.37
exon number 1
gene id G181632
representative True

Chromosome Information

Item Value
chromosome id NC_047605.1
NCBI id CM018551.1
chromosome length 26640196
location 15085901 ~ 15086320 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CATTTTGTTTCAAGATGTTTCATTTATCAGCACTTACGGCACAACTTGAATGTTAATTTAATGAGTGTAACAAAATTAACATAATGATATCCAATGTCTTTAATGCACTTGTACAGCCCCTGTGTGCTTGCTTTCAGCATTCACTTAatcatctttatcctggtcagggtcgcattAAAGGTGTAGTGAGGTGAAGTGTTACAGGAAAATCTATCCAGCAGCCTTTGTGGTTAACAATTTAACCTTATGTACTGAATTCAGTGTATCTGTTAACCAGTTACAGTGGTAATGTAGAGTGTTTTAGTGTATTGGTCGTCTCTGTGGTTAACCAGTTACAGTGGTAATGTAGAGTGTTTTAGTGTATTGGTCGTCTCTGTGGTTAACCAGTTACAGTGGTAATGTAGAGTGTTTTAGTGTATT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_003403448.2 lncRNA upstream 83668 14994688 ~ 15002233 (+) True LOC113533733
XR_004579076.1 lncRNA upstream 83668 14994688 ~ 15002233 (+) False LOC113533733
TU214923 lncRNA upstream 108350 14960885 ~ 14977551 (+) True G181599
TU214912 lncRNA upstream 155039 14867927 ~ 14930862 (+) True G181588
TU214795 lncRNA upstream 420837 14664701 ~ 14665064 (+) True G181475
TU215238 lncRNA downstream 206918 15293238 ~ 15294067 (+) True G181851
TU215210 lncRNA downstream 212928 15299248 ~ 15308946 (+) False G181824
TU215211 lncRNA downstream 218016 15304336 ~ 15308946 (+) True G181824
TU215365 lncRNA downstream 286438 15372758 ~ 15372970 (+) True G181944
TU215366 lncRNA downstream 286900 15373220 ~ 15383177 (+) True G181945
XM_034308424.1 mRNA upstream 519 15080920 ~ 15085382 (+) True atpaf1
XM_034309001.1 mRNA upstream 6134 15050189 ~ 15079767 (+) True frem1b
XM_034309000.1 mRNA upstream 6134 15050189 ~ 15079767 (+) False frem1b
XM_034309003.1 mRNA upstream 6134 15050189 ~ 15079767 (+) False frem1b
XM_026913598.2 mRNA upstream 6134 15050589 ~ 15079767 (+) False frem1b
XM_026927363.2 mRNA downstream 1920 15088240 ~ 15096387 (+) True rab3b
XM_026923150.2 mRNA downstream 12995 15099315 ~ 15114363 (+) True nrd1b
XM_026913059.2 mRNA downstream 28730 15115050 ~ 15126124 (+) True axdnd1
XM_026912512.2 mRNA downstream 45687 15132007 ~ 15148372 (+) False tdrd5
XM_026912494.2 mRNA downstream 45687 15132007 ~ 15148372 (+) False tdrd5
XR_004579090.1 other upstream 374174 14708927 ~ 14711727 (+) False pdzk1ip1
XR_004579085.1 other upstream 439079 14622543 ~ 14646822 (+) True si:dkey-121a11.3
TU214729 other upstream 491286 14589919 ~ 14594615 (+) False ankrd29
TU214656 other upstream 522935 14561690 ~ 14562966 (+) False LOC113540185
TU214440 other upstream 911683 14165026 ~ 14174218 (+) True G181175
TU215983 other downstream 1168743 16255063 ~ 16255852 (+) False LOC113532318
XR_003403746.1 other downstream 1493916 16580236 ~ 16580303 (+) True LOC113537281
TU216336 other downstream 1496983 16583303 ~ 16584943 (+) True G182819
TU216450 other downstream 1826938 16913258 ~ 16922922 (+) True G182877
trnak-cuu_26 other downstream 1943552 17029872 ~ 17029944 (+) True trnak-cuu_26

Expression Profile