RNA id: XR_004579102.1


Basic Information

Item Value
RNA id XR_004579102.1
length 2423
lncRNA type inter_gene
GC content 0.40
exon number 4
gene id LOC113533795
representative False

Chromosome Information

Item Value
chromosome id NC_047605.1
NCBI id CM018551.1
chromosome length 26640196
location 15713433 ~ 15755867 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GCAGAGTGAGCAGATCTGTAACTGAAGACAGGCTCATTTTCAAAAACAGAACCAAACAGTGAGATGTGGAGCGCGGCCTGAGATGCTGAAAGTCAGGGCcgaaaacacaaagcagatgCAAGAGTACAGAGTTTAGGAGGCAGAGAACGAGCCGAGAGTGGGAGTAGGAATACGGGATGATGGAGGACTGAACTGAGAGCAGGTGAACACAGCTGTGGACCGCCGCCggctctcttcttcctctcctccctctcttcttcctctcctcatGAGGCTCCGGCTCTGTGTCTCGGGGTCTCAAGGAGACAGCAGGGGCCGGCCAGGCTTCAACGGAGTGGGCAGCAGAGGCGGGCAGTTGCACCCACCGGGCACAGGCTCCTCAGCAGAGTAATCAATACGGGGGAAGAGGCTGCCAGGGGTCGGGCGACGCAGCCCCGGGCCATGGTGCCAAGGGATCACCAGCGCTCATCTCTCCCTTTACCAGTCAACTTGCATCAGCCAAAGGCGGACCATGTGTGAgagcaagagtgtgtgtgtgtggttctgccGGAGGGACCTTCAGTCCCAACACCACTTGATAAAACTTTGTCTGCGggagaatgaacagaaaaagaGTGTCAAAGGTCTTTTTCCCTCTCCTCAATTCCTTTTTTACTGTGAGTGCACATTCCCAGTGACTGTTTGAATGAGGGCTTGACGTACAATCCCTCTTACAGGCCCTCCTCCAAGCCTCTACATCAGATGAGCTGGCAAGAGAGGACAACTTgaacttttgtcttttttggacgacattttttttgcctttctgTTGTAGATTAAATTAGATGATTTTTTCAAAATCCTCACCACTGTTTGAGAGCTTCTAAAAAGGCTTTGGTTTTAATCCACATGAAGAGGCTTGGCACTCTTGTCTACATACTTCAGTACTGCTGGACCTCCACAGTACCAGGTTTTAATAAGATGACATTCAGAGGGAGTGCAAAGTAGAGGAGGCTGAGCTCAAAATCTAGGACCAAAATTACCCAATAAACTTTCCCAGAATTTGTCACTCATTGTTTTCAGCCATTCCCTGGAAAGCTCCATTTCCTTCCATGAGACACAACGAACATAGGTGAATGGAATGATTATGTTGCTAAAAGTAGTGCCAAGTCCCCAAGGATTCTTTAAGGAATGAAGTTTACTAGGAGATGATGGAGTCTAATCCTCTGAAATGgatTATGAATGCTGTTCAGAGCCACTCCCGGGATGGTGTGTTTCAGATCTGTAGCCCTGACCCACTGCAGGATGAAAATGATAACATCAGTGATATTTTACTGTCAGTGATTGCTTACAGAATTTTGCTTGTGCCCTTTTATACTGGTGAGTATTTCAACAAGGTAAGTTTCTGATCATAATTTAAACAGCATAAATAGAAAAGGCTGTGATATTGCATACATATAAACTTCAAATAGACCatttcaaatgcttttttttaattggcacctacaatgaaagaaataaacctTGGACTGCAGCTGGTTTCCCAGCTAAAAAAATTACTTCTTTTCTatgttctaattttttttttcagttgcaaCAAATTGACAAGtaggtttgatttttttccccccattagtatgtttttttttatcgtgTCTAACCTGTATGATGTATAGCATACTAGggaaatctgaaatatttgtaCAGTTAATAGAGTACTACACAGGTACAGATGATGATATTATTTGCAGAcctatttgcatttttaagagCAGACATACAAGACGAAAAAGCAAAACCTGCTTGTACAAAGTGTGATATCCTTATCGCCATACATTAATTATAGCATAATCTCTGATATTTGTTGAAGTTGTGTTTACAGTATGAATATTGtagtaataaattaattatgcaGAATGAATTAACAATAAAAGTGAAACCTGAATTTATTCTGTGTtgcgtgttttttttaacttatggTTGTTCAATACGGTATAAAATGTGTCTCATTATTAGTGACAgggaaacacaaataaatgtttatttccatgggtaaacaaatgaatatattttgcctaatgaatgattttttttgcacttcgCAGTGTAACGAAGCAGTGTAACGTgctaatgtttgtgtgtctgtgtctgcatAAAATTAtacgctcattaatattcaaatgtgttcaaatattaaatgatgttattaagatttaaatacattttttgagGAATTTCAAAAGCCTGGtctataatgttttattttatgtgaaatgttttgtgctgtttgattttttttctataaaaaaatatttatgcataaaCCTAAGTAGGTCTAATGAGGTTTTGTGTATAGATGAATCATATAAGAGGAAATCATAATGCGTTGAAGAATTGATGTATACCAAGTGTAATGTATGTTAAATAAAGAGTTCTCAAGCTGC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU215565 lncRNA upstream 40270 15668828 ~ 15673982 (+) True borcs8
TU215564 lncRNA upstream 40826 15668828 ~ 15673426 (+) False borcs8
TU215447 lncRNA upstream 198297 15515741 ~ 15515955 (+) True G182012
XR_004579124.1 lncRNA upstream 312127 15391070 ~ 15402125 (+) True LOC113534769
TU215367 lncRNA upstream 337025 15376076 ~ 15377227 (+) True G181946
TU215605 lncRNA downstream 42816 15798683 ~ 15799329 (+) True G182154
TU215606 lncRNA downstream 48680 15804547 ~ 15804748 (+) True G182155
TU215603 lncRNA downstream 117143 15873010 ~ 15885825 (+) False G182152
TU215602 lncRNA downstream 123664 15879531 ~ 15885825 (+) True G182152
TU215618 lncRNA downstream 137425 15893292 ~ 15893527 (+) True G182167
XM_026912605.2 mRNA upstream 22142 15675692 ~ 15692110 (+) True mef2b
XM_026912664.2 mRNA upstream 40807 15668798 ~ 15673445 (+) False borcs8
XM_026912680.2 mRNA upstream 40807 15668798 ~ 15673445 (+) False borcs8
XM_026912688.2 mRNA upstream 44045 15668798 ~ 15670207 (+) False borcs8
XM_026912651.2 mRNA upstream 48526 15662485 ~ 15665726 (+) True nr2c2ap
XM_034308771.1 mRNA downstream 20819 15776686 ~ 15800617 (+) False gatad2ab
XM_026920973.2 mRNA downstream 20819 15776686 ~ 15800617 (+) False gatad2ab
XM_026920956.2 mRNA downstream 20820 15776687 ~ 15800617 (+) True gatad2ab
XM_034308770.1 mRNA downstream 21601 15777468 ~ 15800617 (+) False gatad2ab
XM_026946813.2 mRNA downstream 49419 15805286 ~ 15838980 (+) True yjefn3
XR_004579090.1 other upstream 1002525 14708927 ~ 14711727 (+) False pdzk1ip1
XR_004579085.1 other upstream 1067430 14622543 ~ 14646822 (+) True si:dkey-121a11.3
TU214729 other upstream 1119637 14589919 ~ 14594615 (+) False ankrd29
TU214656 other upstream 1151286 14561690 ~ 14562966 (+) False LOC113540185
TU214440 other upstream 1540034 14165026 ~ 14174218 (+) True G181175
TU215983 other downstream 499196 16255063 ~ 16255852 (+) False LOC113532318
XR_003403746.1 other downstream 824369 16580236 ~ 16580303 (+) True LOC113537281
TU216336 other downstream 827436 16583303 ~ 16584943 (+) True G182819
TU216450 other downstream 1157391 16913258 ~ 16922922 (+) True G182877
trnak-cuu_26 other downstream 1274005 17029872 ~ 17029944 (+) True trnak-cuu_26

Expression Profile