RNA id: TU215606


Basic Information

Item Value
RNA id TU215606
length 202
lncRNA type inter_gene
GC content 0.39
exon number 1
gene id G182155
representative True

Chromosome Information

Item Value
chromosome id NC_047605.1
NCBI id CM018551.1
chromosome length 26640196
location 15804547 ~ 15804748 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

gtttgggatccttagttccagtgaagggaattgtaatgccacagcatacaaagacatcctatacaattgtgtgcttctaactttgcaTCAACAGTTTGGGTGacggtcaggtatccacaattttttgtgtatatttaagaGTGCCGATAATTGTGCAACATGTTATTGAGGGCAAAatcattctttttgttttgaggACAGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU215605 lncRNA upstream 5218 15798683 ~ 15799329 (+) True G182154
XR_004579098.1 lncRNA upstream 48680 15718529 ~ 15755867 (+) False LOC113533795
TU215603 lncRNA downstream 68262 15873010 ~ 15885825 (+) False G182152
TU215602 lncRNA downstream 74783 15879531 ~ 15885825 (+) True G182152
TU215618 lncRNA downstream 88544 15893292 ~ 15893527 (+) True G182167
TU215560 lncRNA downstream 133352 15938100 ~ 15987981 (+) True G182115
TU215562 lncRNA downstream 183882 15988630 ~ 15990410 (+) True G182116
XM_034308771.1 mRNA upstream 3930 15776686 ~ 15800617 (+) False gatad2ab
XM_026920973.2 mRNA upstream 3930 15776686 ~ 15800617 (+) False gatad2ab
XM_026920956.2 mRNA upstream 3930 15776687 ~ 15800617 (+) True gatad2ab
XM_034308770.1 mRNA upstream 3930 15777468 ~ 15800617 (+) False gatad2ab
XM_026912605.2 mRNA upstream 112437 15675692 ~ 15692110 (+) True mef2b
XM_026946813.2 mRNA downstream 538 15805286 ~ 15838980 (+) True yjefn3
XM_026926784.2 mRNA downstream 36249 15840997 ~ 15855719 (+) True cilp2
XM_026928114.2 mRNA downstream 207720 16012468 ~ 16030851 (+) True cbarpb
XM_026947079.2 mRNA downstream 252168 16056916 ~ 16063110 (+) True fstl3
XM_026946320.2 mRNA downstream 252176 16056924 ~ 16063110 (+) False fstl3
XR_004579090.1 other upstream 1092820 14708927 ~ 14711727 (+) False pdzk1ip1
XR_004579085.1 other upstream 1157725 14622543 ~ 14646822 (+) True si:dkey-121a11.3
TU214729 other upstream 1209932 14589919 ~ 14594615 (+) False ankrd29
TU214656 other upstream 1241581 14561690 ~ 14562966 (+) False LOC113540185
TU214440 other upstream 1630329 14165026 ~ 14174218 (+) True G181175
TU215983 other downstream 450315 16255063 ~ 16255852 (+) False LOC113532318
XR_003403746.1 other downstream 775488 16580236 ~ 16580303 (+) True LOC113537281
TU216336 other downstream 778555 16583303 ~ 16584943 (+) True G182819
TU216450 other downstream 1108510 16913258 ~ 16922922 (+) True G182877
trnak-cuu_26 other downstream 1225124 17029872 ~ 17029944 (+) True trnak-cuu_26

Expression Profile