RNA id: TU215642


Basic Information

Item Value
RNA id TU215642
length 291
lncRNA type inter_gene
GC content 0.55
exon number 2
gene id G182190
representative True

Chromosome Information

Item Value
chromosome id NC_047605.1
NCBI id CM018551.1
chromosome length 26640196
location 16006054 ~ 16009235 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TGTTTCTTACAGAAAGGTCCAGGCTATCCAGAGGAACAGCCTCCTCAGCAAGCAGCTGCACCGAAGAGTCAGCATTGACGGTGACTGAACCactgctcacAAATACTTAGCAGAGGAGCCGTCCTCGCTGAAGACAGTGACCACCCCGGGCCTCAGCACCTGCAGCGTGGGGACATGAGCAGGGAGGATACCGAAGGCGCCGGTCATCGTGGGGACATCGACCTGCTTCACACTGGCTCCATTGAAGAAGACCTGCAGAAACACATAACAGACCTGCTGAGTGAATACAGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU215562 lncRNA upstream 15644 15988630 ~ 15990410 (+) True G182116
TU215560 lncRNA upstream 18073 15938100 ~ 15987981 (+) True G182115
TU215618 lncRNA upstream 112527 15893292 ~ 15893527 (+) True G182167
TU215603 lncRNA upstream 120229 15873010 ~ 15885825 (+) False G182152
TU215602 lncRNA upstream 120229 15879531 ~ 15885825 (+) True G182152
TU215985 lncRNA downstream 250823 16260058 ~ 16260316 (+) True G182483
XR_004579080.1 lncRNA downstream 699390 16708625 ~ 16720748 (+) False LOC117598408
TU216395 lncRNA downstream 704478 16713713 ~ 16725527 (+) True LOC117598408
XR_004579047.1 lncRNA downstream 843173 16852408 ~ 16857137 (+) True LOC117598387
TU216484 lncRNA downstream 951424 16960659 ~ 16961299 (+) True G182906
XM_026926784.2 mRNA upstream 150335 15840997 ~ 15855719 (+) True cilp2
XM_026946813.2 mRNA upstream 167074 15805286 ~ 15838980 (+) True yjefn3
XM_026920973.2 mRNA upstream 205437 15776686 ~ 15800617 (+) False gatad2ab
XM_026928114.2 mRNA downstream 3233 16012468 ~ 16030851 (+) True cbarpb
XM_026947079.2 mRNA downstream 47681 16056916 ~ 16063110 (+) True fstl3
XM_026946320.2 mRNA downstream 47689 16056924 ~ 16063110 (+) False fstl3
XM_034308630.1 mRNA downstream 65327 16074562 ~ 16085133 (+) False bsg
XM_026913508.2 mRNA downstream 65330 16074565 ~ 16085133 (+) True bsg
XR_004579090.1 other upstream 1294327 14708927 ~ 14711727 (+) False pdzk1ip1
XR_004579085.1 other upstream 1359232 14622543 ~ 14646822 (+) True si:dkey-121a11.3
TU214729 other upstream 1411439 14589919 ~ 14594615 (+) False ankrd29
TU214656 other upstream 1443088 14561690 ~ 14562966 (+) False LOC113540185
TU214440 other upstream 1831836 14165026 ~ 14174218 (+) True G181175
TU215983 other downstream 245828 16255063 ~ 16255852 (+) False LOC113532318
XR_003403746.1 other downstream 571001 16580236 ~ 16580303 (+) True LOC113537281
TU216336 other downstream 574068 16583303 ~ 16584943 (+) True G182819
TU216450 other downstream 904023 16913258 ~ 16922922 (+) True G182877
trnak-cuu_26 other downstream 1020637 17029872 ~ 17029944 (+) True trnak-cuu_26

Expression Profile