RNA id: XR_004579080.1


Basic Information

Item Value
RNA id XR_004579080.1
length 688
lncRNA type inter_gene
GC content 0.47
exon number 2
gene id LOC117598408
representative False

Chromosome Information

Item Value
chromosome id NC_047605.1
NCBI id CM018551.1
chromosome length 26640196
location 16708625 ~ 16725527 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TACTGGAACATGCGGACACTTTCGAGGGGAAATGTCACTTTAACGCCACATTTTGTTGGGATAGCGATAAACATTTAGACAGAACATTAAATAGTAAtggatatattattattattattattattattattattattattattatttaaggaaTTTAATCCCCCCTCGTAGTTCCCAGTACAAACCCCACTTTCTAGTGCTGTTTGCTAAGTTTGCCGTTTTgttagcaaaacaaaaaaaaattagcaaagaGGACCAGAAACGTTTCAGAGAAATGCTGTAGCACTTTATCACCCCCATCTGTTGCATCTCCTCTAGCCTCTCTGTCAGCAAGTGGGCTGTGTGTGCGGCTCTTTGGAACTTCTTCCATAACGACCACACCGAtgccctcctcctcctcatcctcctcatcctctggATGCAGCTGGCCCCTGGTGGATCTCGGTCCTGCGCTGGTCGGCTCCAGAGGGGCTTCAAGCACATCTGGTTCTCGTACGCGAGGCTTGCGCCCACGGCGAGATGGGATGCCATTGCAGCCATCCTTCTTCAAGTGGCGGTGGAGATGGTCCGAGCGAACAAAGGTCTTAAAGCAGCTGGAGCACTGATAGGGGCGTAAGCCTGTGTGTACACGCATGTGATTCTTCAGGTCATAGTTGTGAGCAAAGGCGGCACCACACTGTGTGCACAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU215985 lncRNA upstream 448309 16260058 ~ 16260316 (+) True G182483
TU215642 lncRNA upstream 699390 16006054 ~ 16009235 (+) True G182190
TU215562 lncRNA upstream 718215 15988630 ~ 15990410 (+) True G182116
TU215560 lncRNA upstream 720644 15938100 ~ 15987981 (+) True G182115
TU215618 lncRNA upstream 815098 15893292 ~ 15893527 (+) True G182167
XR_004579047.1 lncRNA downstream 131660 16852408 ~ 16857137 (+) True LOC117598387
TU216484 lncRNA downstream 239911 16960659 ~ 16961299 (+) True G182906
TU216493 lncRNA downstream 268571 16989319 ~ 16989519 (+) True G182910
TU216515 lncRNA downstream 358889 17079637 ~ 17083529 (+) True G182932
TU216521 lncRNA downstream 401165 17121913 ~ 17134999 (+) False si:ch211-126j24.1
XM_034308634.1 mRNA upstream 58510 16606126 ~ 16650115 (+) True unc13a
XM_034308635.1 mRNA upstream 58510 16606126 ~ 16650115 (+) False unc13a
XM_034308636.1 mRNA upstream 58510 16606126 ~ 16650115 (+) False unc13a
XM_034308637.1 mRNA upstream 58511 16606126 ~ 16650114 (+) False unc13a
XM_034308638.1 mRNA upstream 58511 16606126 ~ 16650114 (+) False unc13a
XM_026914053.2 mRNA downstream 53710 16774458 ~ 16786199 (+) True chaf1a
XM_026928360.2 mRNA downstream 81056 16801804 ~ 16814246 (+) True hdgfl2
XM_026916547.2 mRNA downstream 93860 16814608 ~ 16847204 (+) True ap3d1
XM_026916555.2 mRNA downstream 93860 16814608 ~ 16847204 (+) False ap3d1
XM_026916562.2 mRNA downstream 105913 16826661 ~ 16847204 (+) False ap3d1
TU216336 other upstream 123682 16583303 ~ 16584943 (+) True G182819
XR_003403746.1 other upstream 128322 16580236 ~ 16580303 (+) True LOC113537281
TU215983 other upstream 452773 16255063 ~ 16255852 (+) False LOC113532318
XR_004579090.1 other upstream 1996898 14708927 ~ 14711727 (+) False pdzk1ip1
XR_004579085.1 other upstream 2061803 14622543 ~ 14646822 (+) True si:dkey-121a11.3
TU216450 other downstream 192510 16913258 ~ 16922922 (+) True G182877
trnak-cuu_26 other downstream 309124 17029872 ~ 17029944 (+) True trnak-cuu_26
XR_003402991.2 other downstream 475532 17196280 ~ 17215883 (+) False LOC113528769
TU216628 other downstream 719048 17439796 ~ 17445059 (+) False LOC113536271
XR_004579126.1 other downstream 877716 17598464 ~ 17636395 (+) True anos1b

Expression Profile