RNA id: TU216484


Basic Information

Item Value
RNA id TU216484
length 418
lncRNA type intronic
GC content 0.37
exon number 2
gene id G182906
representative True

Chromosome Information

Item Value
chromosome id NC_047605.1
NCBI id CM018551.1
chromosome length 26640196
location 16960659 ~ 16961299 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TCATTTCCAGTAACAAGATAATAAGCATAAATTGtgttacaaattacaaaacatAGTTCAAAAGTACTTAAGTATAGATATTTTGGCAGTCATTAAATACACACTTGAAATTAATTGAACTTTAAAACATGGTAGGTGTTCACAACTAATTGTACCCGTACAATGTTTTATATGCCTTTTTTCAGCATTGGCAGAGTGGCTCAGTACGGTAAAGTGGGATAAAGCCATCTTTTAACGCATGTGAGACTGTGTGCCAGGTCCACGACCATGGAGATAATCATCCAAATCAAATTCATGCCCGACAGGATTAGCTTTCCATCCCTCAACTGGATTACAGAGCTGTCTCGTGCAGCAGCTCAGGAAGCTTCCAGTCTGATTCTATCctctgattttatatattttgtatagtATCTCTTTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_004579047.1 lncRNA upstream 103522 16852408 ~ 16857137 (+) True LOC117598387
TU216395 lncRNA upstream 235132 16713713 ~ 16725527 (+) True LOC117598408
XR_004579080.1 lncRNA upstream 239911 16708625 ~ 16720748 (+) False LOC117598408
TU215985 lncRNA upstream 700343 16260058 ~ 16260316 (+) True G182483
TU215642 lncRNA upstream 951424 16006054 ~ 16009235 (+) True G182190
TU216493 lncRNA downstream 28020 16989319 ~ 16989519 (+) True G182910
TU216515 lncRNA downstream 118338 17079637 ~ 17083529 (+) True G182932
TU216521 lncRNA downstream 160614 17121913 ~ 17134999 (+) False si:ch211-126j24.1
TU216605 lncRNA downstream 447246 17408545 ~ 17411425 (+) False kcnh1b
XR_004579106.1 lncRNA downstream 455431 17416730 ~ 17423320 (+) True LOC113535983
XM_026916010.2 mRNA upstream 13201 16912572 ~ 16947458 (+) True LOC113527868
XM_026923600.2 mRNA upstream 98510 16858927 ~ 16862149 (+) True LOC113532286
XM_034308535.1 mRNA upstream 98510 16859207 ~ 16862149 (+) False LOC113532286
XM_026916547.2 mRNA upstream 113455 16814608 ~ 16847204 (+) True ap3d1
XM_026916555.2 mRNA upstream 113455 16814608 ~ 16847204 (+) False ap3d1
XM_026916486.2 mRNA downstream 38806 17000105 ~ 17066956 (+) False tle2b
XM_026916459.2 mRNA downstream 42399 17003698 ~ 17066956 (+) True tle2b
XM_026916476.2 mRNA downstream 42399 17003698 ~ 17066956 (+) False tle2b
XM_026916468.2 mRNA downstream 42399 17003698 ~ 17066956 (+) False tle2b
XM_026916511.2 mRNA downstream 42399 17003698 ~ 17066956 (+) False tle2b
TU216450 other upstream 37737 16913258 ~ 16922922 (+) True G182877
TU216336 other upstream 375716 16583303 ~ 16584943 (+) True G182819
XR_003403746.1 other upstream 380356 16580236 ~ 16580303 (+) True LOC113537281
TU215983 other upstream 704807 16255063 ~ 16255852 (+) False LOC113532318
XR_004579090.1 other upstream 2248932 14708927 ~ 14711727 (+) False pdzk1ip1
trnak-cuu_26 other downstream 68573 17029872 ~ 17029944 (+) True trnak-cuu_26
XR_003402991.2 other downstream 234981 17196280 ~ 17215883 (+) False LOC113528769
TU216628 other downstream 478497 17439796 ~ 17445059 (+) False LOC113536271
XR_004579126.1 other downstream 637165 17598464 ~ 17636395 (+) True anos1b
XR_004579060.1 other downstream 710872 17672171 ~ 17751502 (+) True mcf2l2

Expression Profile