Gene
RNA
| Item | Value |
|---|---|
| RNA id | TU216493 |
| length | 201 |
| lncRNA type | inter_gene |
| GC content | 0.51 |
| exon number | 1 |
| gene id | G182910 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | NC_047605.1 |
| NCBI id | CM018551.1 |
| chromosome length | 26640196 |
| location | 16989319 ~ 16989519 (+) |
| genome version | GENO_Phyp_1.0_2019_striped_catfish_Genome |
| species | striped catfish (Pangasianodon hypophthalmus) |
| id | name | namespace |
|---|---|---|
| GO:0038023 | signaling receptor activity | molecular_function |
| GO:0060089 | molecular transducer activity | molecular_function |
| GO:0008227 | G protein-coupled amine receptor activity | molecular_function |
| GO:0004888 | transmembrane signaling receptor activity | molecular_function |
| GO:0004930 | G protein-coupled receptor activity | molecular_function |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU216484 | lncRNA | upstream | 28020 | 16960659 ~ 16961299 (+) | True | G182906 |
| XR_004579047.1 | lncRNA | upstream | 132182 | 16852408 ~ 16857137 (+) | True | LOC117598387 |
| TU216395 | lncRNA | upstream | 263792 | 16713713 ~ 16725527 (+) | True | LOC117598408 |
| XR_004579080.1 | lncRNA | upstream | 268571 | 16708625 ~ 16720748 (+) | False | LOC117598408 |
| TU215985 | lncRNA | upstream | 729003 | 16260058 ~ 16260316 (+) | True | G182483 |
| TU216515 | lncRNA | downstream | 90118 | 17079637 ~ 17083529 (+) | True | G182932 |
| TU216521 | lncRNA | downstream | 132394 | 17121913 ~ 17134999 (+) | False | si:ch211-126j24.1 |
| TU216605 | lncRNA | downstream | 419026 | 17408545 ~ 17411425 (+) | False | kcnh1b |
| XR_004579106.1 | lncRNA | downstream | 427211 | 17416730 ~ 17423320 (+) | True | LOC113535983 |
| XR_003403652.2 | lncRNA | downstream | 427211 | 17416730 ~ 17423320 (+) | False | LOC113535983 |
| XM_026919098.2 | mRNA | upstream | 13742 | 16949748 ~ 16975577 (+) | True | tle5 |
| XM_026919107.2 | mRNA | upstream | 13742 | 16949759 ~ 16975577 (+) | False | tle5 |
| XM_026916010.2 | mRNA | upstream | 41861 | 16912572 ~ 16947458 (+) | True | LOC113527868 |
| XM_026923600.2 | mRNA | upstream | 127170 | 16858927 ~ 16862149 (+) | True | LOC113532286 |
| XM_034308535.1 | mRNA | upstream | 127170 | 16859207 ~ 16862149 (+) | False | LOC113532286 |
| XM_026916486.2 | mRNA | downstream | 10586 | 17000105 ~ 17066956 (+) | False | tle2b |
| XM_026916459.2 | mRNA | downstream | 14179 | 17003698 ~ 17066956 (+) | True | tle2b |
| XM_026916476.2 | mRNA | downstream | 14179 | 17003698 ~ 17066956 (+) | False | tle2b |
| XM_026916468.2 | mRNA | downstream | 14179 | 17003698 ~ 17066956 (+) | False | tle2b |
| XM_026916511.2 | mRNA | downstream | 14179 | 17003698 ~ 17066956 (+) | False | tle2b |
| TU216450 | other | upstream | 66397 | 16913258 ~ 16922922 (+) | True | G182877 |
| TU216336 | other | upstream | 404376 | 16583303 ~ 16584943 (+) | True | G182819 |
| XR_003403746.1 | other | upstream | 409016 | 16580236 ~ 16580303 (+) | True | LOC113537281 |
| TU215983 | other | upstream | 733467 | 16255063 ~ 16255852 (+) | False | LOC113532318 |
| XR_004579090.1 | other | upstream | 2277592 | 14708927 ~ 14711727 (+) | False | pdzk1ip1 |
| trnak-cuu_26 | other | downstream | 40353 | 17029872 ~ 17029944 (+) | True | trnak-cuu_26 |
| XR_003402991.2 | other | downstream | 206761 | 17196280 ~ 17215883 (+) | False | LOC113528769 |
| TU216628 | other | downstream | 450277 | 17439796 ~ 17445059 (+) | False | LOC113536271 |
| XR_004579126.1 | other | downstream | 608945 | 17598464 ~ 17636395 (+) | True | anos1b |
| XR_004579060.1 | other | downstream | 682652 | 17672171 ~ 17751502 (+) | True | mcf2l2 |
