RNA id: TU216521


Basic Information

Item Value
RNA id TU216521
length 1762
lncRNA type sense_over
GC content 0.46
exon number 2
gene id si:ch211-126j24.1
representative False

Chromosome Information

Item Value
chromosome id NC_047605.1
NCBI id CM018551.1
chromosome length 26640196
location 17121899 ~ 17189315 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CCTCTGACTGTCGGCGAAGATAATCAGTGTGTAAGTGAGGATCCGTGTCCGAGATGAGCCTTCAGCCAGGGGGTTAGAAAGCGAGCGTGAGACAGCTAAGCGATCCCTGAGTGAGAGGCACAGgcagaggcagaggcagaggcAGGCCGGTCACAGCTCGAGCCGCGAGCCGGGAGAGGCGATGATGGCGGCGGCCATAGAGAGAGGAGGGGTCCGGGCCGCCTTCATGAATCCAGGCACGGGAGGCGTCGGTGGCGGTGTCGGTGGTCTCGCACCGGGGGTCGGGCTCGCTGCTCCCGGAGTCATGCCCGGAGCTGGAGCTGCAGCCTCGGGCTCTTCGGGTCCCGTTCCTGTTCCTATGAACCTTTTTGCGACGTGGGAGATCGACCGATCCTCTCCGAGCTGCGTCCCGAGggctacgtaacacacttggaggaaagcactatccaccctcttccacattCATGAGCTCCAAAACACCTGTGATTTGctggtgttgctgtgattgacagaggagagagagtatgccatccctcccacccaagAGAGCACTGTCAGACTGGCTGACACACAGGATTATGGGATACACTGGACAGGGACAGTTTGgactgtacatatacacaacatGATTATACACAGACATGACTGGATGCCCTTCTGCTTCAAAATACTCATTGAGTCGGCAGCACTCGTTCACACCGATCTTTGATTTATATTAGtgattaatattcatgaaacaAAAGCTGGCAAAATACatagttttcattttcactttctgCTACATGTGGACAGATTTATACCACACAATGTGAAATGTCCAGACTTTAGATTGTGAATGTGTGATAAGTTTGTaagttatgtttacattcattaCAATACATTGTTCAGTGAAATGTGACAGCACTCCACCACATGCAAGCTAGGGAGTGTGTAGCACAATcaacatcacttcctgtgtgagTCATTTCCTGCTAATAGGTTAGTACATGTGTTAGTGTAAGTGAGAGAAAGTTGGTCCAGCGGGAGCATGCCCAGCTGTGTATGGCATGAATTTGGCCTTTGCGCGATGGAGGCACACCAGGGCGCAGTCTGCTGAGTCAACAAGTGTTTGTTCATTTAGATAAAGAACAGCGGGCTCCTGGCTCTCCACTGCTCTGTTTACAGAgtcaccagacacacacacacacacagagactatTGTTATTTCTATCATAGTGCTTTGCAGCCTGGAACTGCAGTGCTTTTGAAGCTCTTCTTACACACAGttctgaaataaaacatatcTTTAAGGCTAAAGGACATTAGCAGAGTTCTTGCTTATGTGGATAATTAAACCAAGCGAGGCTCCCTGTGAACATCAGGCATTGATCACGACTGAATAAATGCTTATTTGAGGACGCAGCCCCATTCATTATGTAAATGCCGAATCTTTTGTTATTCATCATCCCAGAGTTTGTGCGGATCTGAAGAGCATAGAGCTTTTGATACACACCTCTCAAAGCATAACAGATGGCTGTTTACACACCAAAGCTAAGGTCACTAGGATGCATCATACTTTTGCAAGAATAGCATCATTTGCtttgcatcattttcatttgtttataaatgAAAGTATCAttaatctcagtttttcacagttttttttttaattcagtgctACAGTTTTGCTGGAATTTTCTTAGGAAACCTATATATAGTGATActtattgtgtattgtagaaatgtctttgagaattgtgatatgatatttttgacaTATTAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU216515 lncRNA upstream 38384 17079637 ~ 17083529 (+) True G182932
TU216493 lncRNA upstream 132394 16989319 ~ 16989519 (+) True G182910
TU216484 lncRNA upstream 160614 16960659 ~ 16961299 (+) True G182906
XR_004579047.1 lncRNA upstream 264776 16852408 ~ 16857137 (+) True LOC117598387
TU216395 lncRNA upstream 396386 16713713 ~ 16725527 (+) True LOC117598408
TU216605 lncRNA downstream 273546 17408545 ~ 17411425 (+) False kcnh1b
XR_004579106.1 lncRNA downstream 281731 17416730 ~ 17423320 (+) True LOC113535983
XR_003403652.2 lncRNA downstream 281731 17416730 ~ 17423320 (+) False LOC113535983
TU216612 lncRNA downstream 281771 17416770 ~ 17423219 (+) False LOC113535983
TU216632 lncRNA downstream 315458 17450457 ~ 17450736 (+) True G183032
XM_026916476.2 mRNA upstream 54957 17003698 ~ 17066956 (+) False tle2b
XM_026917474.2 mRNA downstream 61281 17196280 ~ 17222532 (+) True LOC113528769
XM_026933142.2 mRNA downstream 89427 17224426 ~ 17235688 (+) True soul4
XM_026929441.2 mRNA downstream 105493 17240492 ~ 17277455 (+) True ptk7a
XM_026918740.2 mRNA downstream 146250 17281249 ~ 17331250 (+) True mark1
XM_026922364.2 mRNA downstream 230699 17365698 ~ 17411326 (+) True kcnh1b
trnak-cuu_26 other upstream 91969 17029872 ~ 17029944 (+) True trnak-cuu_26
TU216450 other upstream 198991 16913258 ~ 16922922 (+) True G182877
TU216336 other upstream 536970 16583303 ~ 16584943 (+) True G182819
XR_003403746.1 other upstream 541610 16580236 ~ 16580303 (+) True LOC113537281
TU215983 other upstream 866061 16255063 ~ 16255852 (+) False LOC113532318
XR_003402991.2 other downstream 61281 17196280 ~ 17215883 (+) False LOC113528769
TU216628 other downstream 304797 17439796 ~ 17445059 (+) False LOC113536271
XR_004579126.1 other downstream 463465 17598464 ~ 17636395 (+) True anos1b
XR_004579060.1 other downstream 537172 17672171 ~ 17751502 (+) True mcf2l2
XR_003403373.2 other downstream 537172 17672171 ~ 17749291 (+) False mcf2l2

Expression Profile