RNA id: XM_026922372.2


Basic Information

Item Value
RNA id XM_026922372.2
length 7409
RNA type mRNA
GC content 0.42
exon number 11
gene id kcnh1b
representative False

Chromosome Information

Item Value
chromosome id NC_047605.1
NCBI id CM018551.1
chromosome length 26640196
location 17365698 ~ 17411425 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

cacacactgacacacacacacacacacacacacacggtgttgCCGAGGGACAGCAGAGTGCATCACAGTCACAGTGCCGCATCTCTGTCCCCACAGCATCCGAAATCATGTAGACTCCATGCAGGAGTCACTGCTCGTCCTTTACCGGatcatcagagtcatttctcaGTCCCAGAGTCCCGGGGAGGAGGATCGGGATGGCCGGGGGTCGCAGAGGACTCGTGGCCCCTCAGAATACTTTCCTAGAGAATATCGTCCGGAGGTCCAACGACACCAATTTTGTTTTGGGGAACGCCCAGATTGTGGATTGGCCCATTGTCTACAGTAACGATGGATTCTGCAAGCTCTCAGGCTACCATCGAGCTGAAGTCATGCAGAAGAGCAGCACTTGCAGcttcatgTATGGGGAACTCACTGACAAGGAGACGTCTGAGAAAGTGCGCGAGACCTTCGAGAACTATGAAATGAACTCCTTTGAAATTCTCATGTACAAGAAGAACCGAATGCCTGTGTGGTTCTTCGTGAAGATCGCCCCCATCCGCAATGAGCAGGACAAAGTGGTGCTTTTCCTATGCACGTTTAACGACATCACTGCGTTTAAGCAGCCCATTGAAGACGATTCATCTAAAGGATGGGCTAAGTTTGCCCGTCTCACCCGTGCTTTGACGAGCAGCCGTGGCGTCCTTCAGCAGCTGGCTCCTACTGTTCATAAGGGAGAGAACGTCCACAAGCACTCTCGTTTGGCTgagGTATTGCAGTTGGGATCAGACATCCTCCCCCAGTACAAACAAGAGACACCCAAGACGCCACCCCACATTATCCTGCATTATTGCACCTTCAAGACCACCTGGGACTGGGTGATCCTCATCCTCACCTTCTACACGGCCATCATGGTACCCTACAATGTCTCCTTCAAGACCAAGCAGAACAACGTCACCTGGCTGGTGGTGGACAGCATCGTGGACGTCATCTTCCTCGTGGATATTGTGCTGAATTTCCACACGACGTTTGTAGGGCCAGCTGGGGAGGTGATATCAGACCCGAAACTTATCCGCATGAACTATGTGAAGACCTGGTTTGTCATCGACCTGCTTTCCTGCCTACCCTACGATGTCATCAATGCTTTTGAGAATGTAGATGAGGGCATTAGTAGTCTCTTCAGCTCTCTGAAGGTGGTGCGACTCCTGCGTTTGGGCCGTGTGGCCCGCAAGCTGGACCACTACATCGAGTATGGAGCGGCAGTACTGgtgctgctggtgtgtgtgtttggcctgGCTGCCCACTGGCTGGCCTGCATCTGGTACAGCATTGGTGACTACGAGGTCATCGATGAGGAGGCCAATGTGGTGCGCACCGACAGCTGGCTGTATCTGCTGGGAGAGGCAGTGGGCACACCATACCGCTTCAACACCAGCGGTACAGGCAAGTGGGAGGGCGGCCCCAGCAAGGACTCAGTCTACATCACCTCACTGTATTTCACCATGACCAGCCTGACCAGCATCGGGTTTGGCAACATCGCCCCCACTACGGACGGGGAGAAGATTTTCGCTGTGGCCATGATGATGATCGGATCCCTACTGTATGCCACCATCTTCGGAAACGTGACCACTATCTTCCAGCAGATGTACGCTAACACTAACCGCTACCACGAGATGCTGAACAGTGTGAGAGATTTCCTGAAGCTCTACCAGGTCCCTAAGGGGCTTAGTGAGAGAGTCATGGACTACATTGTCTCCACTTGGTCCATGTCCAGGGGAATCGACACCGACAAGGTGTTGCAGATCTGCCCAAAGGATATGCGAGCGGATATTTGCGTCCATCTCAACAGGAAGGTGTTCAAAGAGCATCCTGCGTTCCGCTTGGCTAGTGATGGGTGTTTGAGGGCTCTTGCCATGGAGTTTCAGACCATCCACTGTGCTCCAGGGGACCTCATCTACCACGCAGGTGAAAGCGTGGACAGTCTCTGCTTTGTGGTGTCGGGATCCCTGGAGGTCATTCAAGATGATGAGGTGGTTGCCATATTGGGAAAGGGTGATGTGTTTGGAGATGTGTTCTGGAAGGAATTGAACTTAGCGCAGGCCTGCGCCAACGTCCGTGCGCTAACCTACTGTGATCTTCACATCATCAAACGTGATGCCTTACAGAAAGTCCTGGAGTTCTACACGGCCTTCTCGAATCACTTCTCACGCAACCTGGTGCTCACCTACAATCTGAGGAAGAGGATAGTCTTCCGCAAGATCAGTGATGTGAAGcgtgaggaagaggagatgCGGAAAAGGAAGGATGAAGCCCCTCTCAACCTTCCTCCAGATCATCCAGTGCGGCGTCTTTTCCAGCGGTTCCGTCAGCAGAAGGAGGCTCGGCTGGCAGCGGAGAGATCTGATCAAGGAGAAGTGGACATAGAGAAAGGTTCTGTCCTCATGGAGAAGACTATGGTCCATGAAACTAATGCTACAACCAGTATCGTCACAGTGACCGAGAGCCCTGCCACACCTGATGTCGCTTCATCCTCGGCTTCATCAGACTCTGCTTCAAGGACCTCAAACCAAGCCAAACTTCATGCTCCTGTTGGCCATGGTGGCaaccaaacaggaagtaaatCCAGCGAACCTACCAAATCCAAAGCTTGGGGTAGATTTAAGGAAGCCACAGGGAAGGCGGATCTCTCCTGGAGTGCCGTTTCCAAAGCTGAGTCCATGGAGACCCTTCCAGACAGGACTAAGTTGCAAGGAGAGCTGTCGCTGAAGAAGACAGACTCCTGTGACAGCGGTATCACAAAGAGCGACCTGCGACTGGACAACGTCGGCGAAGGAAGCATCCGAACCCCTCAGGAGCGGAGCCCCATGCAGGCTGAGGGGAAGCGAGCTTTCTATCCCATTCCTGAACACAACCTGCAGGCTTCTTTGCTGGAGCTAAAGCAGGAGCTGAGAGGTGACATCCACTACTTGAGCAACCGCATGGCAGTCCTGGAGGCACAACTAGCTGAGATGCTGCAACTGCTCAAGGAAAGAAAGACTTCAGGATGCTCACACCTGTACGAAATATCACGACCTGGGACTCCAGATTCAGACAAGGATAACGACATGTTCTCGTAAACAGGCGTTCCGTGAATAAGGTGTGGCGTTGACACTGTAACTGTGTTTTTGGAGATAAGATCCATGGGGGTGAGTGCTCAAATGGTTCAATTTTAGCATTCAAATCTGTCCAAGTGTTCTTCAAATGGGATGTGTGGAAGGTCTTGCTGGTTATTTACTGAGATGTGgccttcattttcttttgccaCTGTTGACTGGCATTTTGTTTGTAGAAGGATCTACAGGACTTTTCATCTATACAATGTAAAACAACTGTTAACCTTTGGTTAAAatttcaaatcatatttttttcagctttagacatattttttcacttgttttagGAACGATGCAAGATATCATTTAATTCCAGCATTTTTGATTTACTGCTTCATGTGTTTCAATGTCAGTTGGACCTGCTCAGTTAGGAAGGCaatataataattaagaaaaatatttttcacatatattGCAATCAGCAGGCAAACAGTGGAGCAGTGAAAAGAATTGCACTGTTACAGAAATGAATGTCATACACTGTCAAATGGTTAATGcatggcagattttttttctaatagtttttaaatagaaaacaaCAAGATTTCAGGGTACGTAGTGGAATATAAGAGGTGGTATTGCCTTGTGACCTGTCAAACCTCCAAGATCAAGACATTACAAATGCTATTCTGTAGTGTGAATAATGTGGTTTCTTtagatttttgtgtgtatgacaacatatagacaaaaaaaacatctgatcaaatattcaaaaatgttgaaaattggaccaatttttttttattttttttttacaacacacATTTAATAGGCCCATctaaaaatatacttgaatGCGTTTTCAACACCttgaaaatatcaaatatctgaGATGcactattaattaaattaattaaatttaattcattaattaaagaaaataataatgcgTATAAGCAATATGGTGATTATATTCTTTTTGATGAGCATGCTCTGGTGGTAACAGAAATGAAACTATGCATGGATCAGGTTTAGCCTAATCACAGTAAATACGCATGTGATTTGTAATTATgcactcagtcttttttaaCACGCTAACACAATCAACATTGTTTCTCTCAACCCCCACCACCCCACCCCTCCACTGTGTGTACTCTCAATGCACTTCTGTGCTTTTATACGGTATATCATTTTGGGTTTTCAAATGCATTTCTTTCTGTTATCAAATTCAAAGGCGTATTTGTATGTTGATTGCTAGTTATAAAAAGTTAAGTGCTTTCGAAACATTGCTACTTTTGCACTTAAAGTCTATCTAGAGCAGTTTTATATGattaatataaatgattaatatGTTTGCACACATTAAGATCAAGTGTATTTATCAGTTTGTtgattttttattgcttttgacAGAGATATATTCAAAGGTACCTTTTgaattgtatattttaaatgtttcattcaCAACTGTAGGTGACTCGCCGCATAGCACACAACATAGTGTACTCTGTTATAACATACCAGCCCTGCATTCCAATACAGTATTTAATATCCCTTTGCAGTACAAGAAGAATGCAGCTTCCAGTAGAAATGCATTTGCAAGCAAGAAGCAGAGCTTGaagtgattaaaataaatatcagtaCTCCCCTTTTTATGGAGAAGAATTCCATGCCAGAATAAAAAGCAATCACgccagtggaaaaaaaacatgaaacacaatAGAATATTGCTTTTCAAGAGAGACATGCAGAAAACGTAcaacacactgaaaagcaaaaccttcactgcATTGCTCTCTCATCACTCGATATCTTTAAAGAAACACAATCAACAGGGGAAgctttttaagaattaaatgctGAAGTGAATGTAATCCACTTTTAAAAGTAATCCATGCGGCTTCATTGCATTTCACTGTGCAAATCAGTTTAAGATtgtttaaaaattgttaaagaCCCTTTAAGCAATCACCatggtgaaaagaaaattaaatagaaTGCAAACTGTGTTGCTTTTCATTAGCCTACATGCGGAAAACATTAcatactgaaaagcaaaaccttcgtTGCATTGCTCTTACGCCACTTGTACCAAGAGCTTGAGAAATGTTTCTACTAAAAATTTGCGTACTTAACAAAACATAGTACTGTCCCCCTTCAGGCACTGAGTTGAAGTAACTTCCTTGGTGATTTGCATTCTCAGTTTGCTTCAAGCTATATTCAGAGTTGTattaactaactagctaacttgcTAACAAGCTGGCAAAGAAATGTCACCAAGTTATGTGAGGTCTCAGGTGGAAACAATGTCAAACACAATTTGAATGTTAACCAAATTAAATGCGttttataataatgcatttttgaaACATTCCGGGCCAAATGTATTAAAAGAACCCAATTATAGACATTTTAGTGACATATACAGTAAGTGTAGTTGGTGTAGTGGGTGACTAagaatgtaactgtaaatgaacACCTTGCCTAATTAACATGTGACTGCTGCATTATAAACCTGTTTTAAGCATGTTTTCCTCTCAGAGAATAAACCTTAGAATTAGATATACTCTGTCACAGCATGTTAATAGGTTTTTAAGTCTGAAAAAGCTGAACATctggaaataaatgaacaggAGTTGTGTCTGTCACACTGAATACTTCTGTAAAATGTGCAATAGTggaaaattgtaattttattaaacGAATCTCAGCTACAGTACGTTGGAACGAACCTGAAGCCAGAAAGGGAACAGTGCCCAAGAACCCCTTTTAGTTTGAGGCTCCAAATTAGATCGGGCTTCCTccaataaatgtataataatgtgaCCTGGCAGACAATATGCTCACTACAGGCTTTTATTGATCATCGCCAGTTATGTTTTAAATACTCTCTTTTTGGAAATAACACCAGGTTTTGATGGGTGTTAAATAGTGTGTGCAGTCACAATGTCAGTATTCAGTGCTGATAAATTGCTAATGGTGgtttgttataataataatctctacCCAGTGACTCCGTAAATGCACATGCAATGAGGCAAAAGCACAAAACGGTACATACTGCCACCTTGATCTTATTAAAGGTGCTAAAAGCCAATtaaagtgtgacagtcaaattTGAACACAGTTTGCAATAGTGCAAAATGACAGCTGTTATACTGTTACAATCATATACAACTCTGTCCTTAATGTCTTGGGTATTTTAAAAAGGATTGCATCATGCAACCTACTCCTGAAGTCCCACTATCTAAACTCGATCGCTCAGGCTGCCAAGACGTCATAAAGTATTTAAACAGCCTTTAATGGATGTGGGGATTCCTTCAAGAGGAAATGGAAGCGGAAGACAGCAAGGGAGTGTTAAACAGTGCTGGAACGCAGGGCTCGTCACATGACTGTTTACATGATCATGAGTGTGTTAAAGTGGGGAAATCGTGGAACTGTGCAGTAcggtacactcttagaaaaaaaaaaaggttaaatctagaggTCTTAGGCTTGTCCAAGTGGGGAACCCTTTTCCTTATCTGTCAGGCTTTCAAGTAGAACTCCTTTTTAAGAATCTAAGAGCATTAGCTACCCAAAGAACCCTCAATGGACAATTATAAGACTGATAATAAGAACCACTGTTTTAAAAGCAATGTTTAAGAATGTGAAACACAACTATGTGGTTTAGTTTCATGAAAGAAAtcttaaagatttattttaatctataGGAATGTTTCAGGAAATGTTTGTAGCAGAGAGTAAAATGTCCACTTGTATTTTTCACAGCAGaattataaaactgtaaatatactgtagtcATAATAGACTGTAAATCAATTTAAGAAATATGCCACACTGTCAGTTAATGAACCCAAAGACAGCTGAGTTGCACTTaggtgtgtttttaaaatccattgtaTAAGTTGAGATTTCACTACCGGAGACTGAATAGTTACAAAAGATCAATTTAGCATGACCTTATCAATAACCTTATTACAAAACAAGATTTCAAGGGCATTTTTACACACTGAAATGGAAAAGGAATGGCATTCTTCTCTTGCAGCTCAAACACTGCTTCATTTTCCACACTCTATAATCAGTGATACAGCTCAGTGTTGTGGATAAAGAATTGACTTATCATGAGTTCTTGCATCTCCTGTCATTCTCACTTAATCCCTttgtataaagttttttttttttttccctgctcacaTTCACCTGTCTATAAATGTAGAAACCAAAAGCACAAAGATGTGGATTGTTCATACAAAATGTCAAATGTTCAAATGAATGATTTTGTATTTTGGAATTGTCTTGACATTTGTTGATTAAAGGAGTAACATATCAATCCTG

Function

GO:

id name namespace
GO:0071805 potassium ion transmembrane transport biological_process
GO:0001756 somitogenesis biological_process
GO:0021576 hindbrain formation biological_process
GO:0034765 regulation of ion transmembrane transport biological_process
GO:0000160 phosphorelay signal transduction system biological_process
GO:0016021 integral component of membrane cellular_component
GO:0000155 phosphorelay sensor kinase activity molecular_function
GO:0005249 voltage-gated potassium channel activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU216521 lncRNA upstream 230699 17121913 ~ 17134999 (+) False si:ch211-126j24.1
TU216515 lncRNA upstream 282169 17079637 ~ 17083529 (+) True G182932
TU216493 lncRNA upstream 376179 16989319 ~ 16989519 (+) True G182910
TU216484 lncRNA upstream 404399 16960659 ~ 16961299 (+) True G182906
XR_004579047.1 lncRNA upstream 508561 16852408 ~ 16857137 (+) True LOC117598387
XR_004579106.1 lncRNA downstream 5404 17416730 ~ 17423320 (+) True LOC113535983
XR_003403652.2 lncRNA downstream 5404 17416730 ~ 17423320 (+) False LOC113535983
TU216612 lncRNA downstream 5444 17416770 ~ 17423219 (+) False LOC113535983
TU216632 lncRNA downstream 39131 17450457 ~ 17450736 (+) True G183032
TU216676 lncRNA downstream 166316 17577642 ~ 17583785 (+) False G183058
XM_026918740.2 mRNA upstream 34448 17281249 ~ 17331250 (+) True mark1
XM_026929441.2 mRNA upstream 88243 17240492 ~ 17277455 (+) True ptk7a
XM_026933142.2 mRNA upstream 130010 17224426 ~ 17235688 (+) True soul4
XM_026917474.2 mRNA upstream 143166 17196280 ~ 17222532 (+) True LOC113528769
XM_026916031.2 mRNA upstream 176383 17121900 ~ 17189315 (+) False si:ch211-126j24.1
XM_026930164.2 mRNA downstream 28496 17439822 ~ 17446248 (+) True LOC113536271
XM_026930276.2 mRNA downstream 35074 17446400 ~ 17449781 (+) True commd2
XM_026919303.2 mRNA downstream 42456 17453782 ~ 17497179 (+) True wwtr1
XM_026919313.1 mRNA downstream 42821 17454147 ~ 17494888 (+) False wwtr1
XM_026917998.2 mRNA downstream 95881 17507207 ~ 17532678 (+) False LOC113528887
XR_003402991.2 other upstream 149815 17196280 ~ 17215883 (+) False LOC113528769
trnak-cuu_26 other upstream 335754 17029872 ~ 17029944 (+) True trnak-cuu_26
TU216450 other upstream 442776 16913258 ~ 16922922 (+) True G182877
TU216336 other upstream 780755 16583303 ~ 16584943 (+) True G182819
XR_003403746.1 other upstream 785395 16580236 ~ 16580303 (+) True LOC113537281
TU216628 other downstream 28470 17439796 ~ 17445059 (+) False LOC113536271
XR_004579126.1 other downstream 187138 17598464 ~ 17636395 (+) True anos1b
XR_004579060.1 other downstream 260845 17672171 ~ 17751502 (+) True mcf2l2
XR_003403373.2 other downstream 260845 17672171 ~ 17749291 (+) False mcf2l2
TU217273 other downstream 362387 17773713 ~ 17781813 (+) False ect2

Expression Profile