RNA id: XR_003403652.2


Basic Information

Item Value
RNA id XR_003403652.2
length 1486
lncRNA type inter_gene
GC content 0.40
exon number 3
gene id LOC113535983
representative False

Chromosome Information

Item Value
chromosome id NC_047605.1
NCBI id CM018551.1
chromosome length 26640196
location 17416730 ~ 17423320 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TATCCAGCAGATTTGTTTTGCCATCCTGGTTGAACTTTCTAGTGAGAGAGTAAAAAACTCCACTAGGATCATACATGTGCTTTAGCAGGAACGCAGGGGGCATAACCTAACAAATGTGTGGAGTCAATTGGTTTCCCAAGGGGGCGCTACTGAGGAGCTGGCTGACCAAGTCTCGACCAAGACTGCTGCTGCTCATCGCCGGCTTGAAGAGGCCTCAAGTCACCCTCATGAGAAGGAAAAGGATGAAGCGCACAAAAGTAGCAAAGGCCACGTAAGCGaaCCAGCAATCGCTTGCCACATTTCAACTGAATCCTTAAGATCAGGCCTGCCTACTGTAGAAATGGAAGAAGCTCAAGACACAGAGGAACTCATTTACCAATCTGTGTCATCTCGACGAACTAAAATCCACAGCAAACCAAAGCGAGGATGGAAAGCAAGGGTTTCACAAAGGTCCAGAGCTCCTGGCTAAAACTTGGACCCATTTTTACCCTATATCCGGCCATCTGTAGATCCCTCCTCTTTAAAAATACACGTTATGGTTAATTATGCTATGCTGGGTGTGACTGTATATTCTTTTACATTGTAGTGACAAATACTTGGTTAAACAGAAATGCTTTCTATTCCTTCACTTCCTGTCAGAGTTTTTGACTTGTTCTGATCGTGTGAGTGAATTTTTTGACgagaaatatttataaaaagtgCACATGTTCCAGGCAATGACTTGTTACCCAAGACAGATATAGTGTCTTGCACAAGCATTCAGCCCcctcttgaacttttccacatttagtAGTCTTACAACTTGGAACTGGTTAATTGCGTAACTAATCCTCATTTTCCCCAGTAACTTACTTTTGGTGGACATCCTCCTCTAGGCAGAATCAtagttgtgccatattctttcaaTTTTTAATAACGGATTTAATGGTGCAGTGTGGCatgtttgggatattttttataaccaaaccctgattgacacttttccagaacttggttttcctttgttttcatgatgctgtttgtttaggtaacTCTGGGGCCTTCCAGAAACAGCAGTCACAactttcacatttttgtttgttaataattttttaaactacattGGAAATTTCACCCCACTTCAGTATTAATTTTCTTGAAGATCCATGATATATCCAACTAAGTCCATGACACTTCCAAGTAGCAACGTCAAAACAAGGAAAAATTCAAGGGAGGTGAATACATATGCAAGGCACTTTGTGGTACTGAAAATAACCATTTGTTCAACTGAACACATTGTCCATTCCACAAAACTGCTTTACAAATCAGTCATGACCAGTTGAACACAGACATCACTATACCAGTAATGACTGATAAGTACCATTTTAATGTGTGACAGTATATGGCACAGCAAGTAGCAGTATTTAACTGGCTCCTGTTACAAAGCTTGGACTTAACCAGAAAGCACTAcgagtatttaaaaaaaaaaaaaaaaaaaaaaaaaaaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU216605 lncRNA upstream 5305 17408545 ~ 17411425 (+) False kcnh1b
TU216521 lncRNA upstream 281731 17121913 ~ 17134999 (+) False si:ch211-126j24.1
TU216515 lncRNA upstream 333201 17079637 ~ 17083529 (+) True G182932
TU216493 lncRNA upstream 427211 16989319 ~ 16989519 (+) True G182910
TU216484 lncRNA upstream 455431 16960659 ~ 16961299 (+) True G182906
TU216632 lncRNA downstream 27137 17450457 ~ 17450736 (+) True G183032
TU216676 lncRNA downstream 154322 17577642 ~ 17583785 (+) False G183058
TU216673 lncRNA downstream 154420 17577740 ~ 17580114 (+) True G183058
TU217213 lncRNA downstream 301443 17724763 ~ 17725260 (+) True G183478
TU217332 lncRNA downstream 464807 17888127 ~ 17888353 (+) True G183566
XM_026922364.2 mRNA upstream 5404 17365698 ~ 17411326 (+) True kcnh1b
XM_026922372.2 mRNA upstream 5404 17365698 ~ 17411326 (+) False kcnh1b
XM_026918740.2 mRNA upstream 85480 17281249 ~ 17331250 (+) True mark1
XM_026929441.2 mRNA upstream 139275 17240492 ~ 17277455 (+) True ptk7a
XM_026933142.2 mRNA upstream 181042 17224426 ~ 17235688 (+) True soul4
XM_026930164.2 mRNA downstream 16502 17439822 ~ 17446248 (+) True LOC113536271
XM_026930276.2 mRNA downstream 23080 17446400 ~ 17449781 (+) True commd2
XM_026919303.2 mRNA downstream 30462 17453782 ~ 17497179 (+) True wwtr1
XM_026919313.1 mRNA downstream 30827 17454147 ~ 17494888 (+) False wwtr1
XM_026917998.2 mRNA downstream 83887 17507207 ~ 17532678 (+) False LOC113528887
XR_003402991.2 other upstream 200847 17196280 ~ 17215883 (+) False LOC113528769
trnak-cuu_26 other upstream 386786 17029872 ~ 17029944 (+) True trnak-cuu_26
TU216450 other upstream 493808 16913258 ~ 16922922 (+) True G182877
TU216336 other upstream 831787 16583303 ~ 16584943 (+) True G182819
XR_003403746.1 other upstream 836427 16580236 ~ 16580303 (+) True LOC113537281
TU216628 other downstream 16476 17439796 ~ 17445059 (+) False LOC113536271
XR_004579126.1 other downstream 175144 17598464 ~ 17636395 (+) True anos1b
XR_004579060.1 other downstream 248851 17672171 ~ 17751502 (+) True mcf2l2
XR_003403373.2 other downstream 248851 17672171 ~ 17749291 (+) False mcf2l2
TU217273 other downstream 350393 17773713 ~ 17781813 (+) False ect2

Expression Profile