RNA id: XM_026930164.2


Basic Information

Item Value
RNA id XM_026930164.2
length 2605
RNA type mRNA
GC content 0.43
exon number 6
gene id LOC113536271
representative True

Chromosome Information

Item Value
chromosome id NC_047605.1
NCBI id CM018551.1
chromosome length 26640196
location 17439796 ~ 17446248 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

ATGAGAATCTTCATTGCCTTCGAGGGGTCTCGTGAGTCGTTTGACATCGCTCCTAATGAGTCAGTGGTGGCTATAAAACAGATGGTCAAGGACTGCTTCAGTGTGCAGCTGTATGATGATAAACAGGTACAGCGGTTCCTGGAGCTGAGGTTCGCTGGTGCTGTCCTGCAGGATGATTGGTGTCTGGCAGATGTGGGCATCTCCTCAGGTTCAACCATCTGCTGCCAGCTGAAGGAGGTCAGCAAGGCTGTGCTCCATGTGTTCAGTGCTGTGACGAAGAAGACCCTGCCTATCATGGGAACAGCATGTCTGCTGGATTCCTCCGTCTCCAAACTTAGGTCCTTGGTGTCCTTGTTACTTGGCCTGCCAGTCAGTGCTTTTACACTGTCGACCCATAGTGGGGCTGAGCTTTATGACTGTAATCTGCTGTCATACTATGCTGTTGAAGCTGGAGATACCCTTTGTCTGGACACTTGGGATGGCTGGACAGAATTCTTGAGAGACTCTTTGGAAGGACACAAGAACAAAGTCCAATGTCATTTCTCTGAAGATAAACCAATTTTAAGGTTTCAGAAACATTTGGCTCTTTATGTTGCCGCTGCACATGGACACCTTGAAATGGCCAGTTGGCTACTAGACAACGGCGTGCAAGCTCACGAGCCTGTGGGTGTCCACCCTTCCCGTGTGTGGTGCTATGAAACAGACCACCCTGAGGCCTTAAAATGTCCTGTACATGCTGCTGTAGAGGCTGGCCAACTTCACATTCTGAAGATGTTCCTCAGCAGGAACATATTAAACCTAGCCTGTCGAGATCCCAGCAACCGAAACCTGCTTCAGATTGCTATATATCATCAACGCAAAAAATGCGTATCTCATCTTGTCTCCAAACTGTACACTATGGTCACCTTTCGTGGTTTCACTCTGTCAACATGGATCTATGTTCAGATCAAGATCTGGATCATCAAGGCTAAAAGAGGACTTAAGACATCTGTCCCAGCAAACAGAGGTCCGTTCAGAAGTAGAGTGGGGGACACTTTGCTAATTGATGGCTTTTCCTTGTCCAGGATGTCCTCAGTGCCCAGGGGTTCTGTGTTCAAAGGATGCACGTGGGTCAACAAATCATCCTGTGGGTTTCAGGCTCTGACATCACAGTTCACAGGCTCATCCTGTCCATGTCATCACCCTGCTGTCCTATCATCCCAGAATGCATCAGAGCGACTACCGCAGCTGCTTCCTCTTGCCCCAAACAAAAGGACAGGGAAAAAGACTAAGGGGAATAATGGATGTGGCAGGAAGAAGCCAAAGGAAATCCTGGTGGCTGAAAATACTGATCACAAACTGTGTGAATGGAGCAGCAGAGTTCCCCTGCCCCACACATTTCGAGATACAGGTCCCAGACCTCTCTTCATTCACAGTAATCCTAAATCAGAAAAAATACTCTGCTCCTTCACACACCTTTGTGGTCGCACTCCAAGAGAGAATGCAATATACTGCTTGGCTATTGCCAGTGCCTTTGTCGAGAAGCCCTGGCTACAGCAGTTAGCCGTTGCACAAACCCTGGCCCGAAGAAGCGTCCAAAAGTTCTGCAAAGTTAACTAAGAATGCACATTTATCTGGGAAACAACAGGAAGACACACTGAAGGCAGTGATGGATGTCTGAATGTGACTTGGGAACTGACAGCAGCTACTATTTTTACAACCTGaaaatagcatttatttttagattgtAGCTACTGTACATTGTCCTGTATCAATGTACTACAACCGACAAGCTCAGAATATAGCTACTGAGGcaactttttaaacattaaaattaaatgactGATTTACTATAAGGTTATATGGGtgtatacaaaaatatattgaacTTAATATTAGGAAATTATGTTGCTGACAGAATTTCAGATACAATAACAGACAAGTAAgcctaataaataataaggtaGTGCTGTAAGTGAGGATATTACAACTTGTTAATAAATTACAAGGATTCCATCATtgcatattttcacattttaatccTGGTTCTCAAGCTGAAAAGCCAGGCCTATACCCTGCAGCTTGGTAGCTTCTGACCAGCTCCCAGCTGCCGAAGCACTGGCCTAACTGGTCAAGCTGGTAGACAATCGTATTTTCAGCGTTATTTTCCTCATTACTGACTTTTTCAGCTACCTTATTACTGATTTATAAATAACTATTTGAGATTTTCTGCCTTACTGTCACATTATGTTCTTAAAAATAACTTGTCTGCGATGTAGCACTAGCATTAGTACTTCTGAACCTGTTTTCTTGCTAGCACCAGATTGACTAGCCTGGCCTGTGATTTGAGAGCTGGTAGCAGGTCAGAAGCTACCAAGCTaccaagcttttttttgtttttttcccaaacaGTATGGTCAGGTATCTTATGAGAAATAACTGATATTGGAACAGTGAATTGGATTTCCAGAACATAAACATAGACAAACAATGAATGCTTTATTGTATGTTATTAGCTAATCTGAGTTtccttttccctttctcttctAAGCGTGTTTGCaatacacattatttaaaaattatttttattatgttcacGGTAAACCCCTTAATATCCTATGTAGAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_004579106.1 lncRNA upstream 16502 17416730 ~ 17423320 (+) True LOC113535983
XR_003403652.2 lncRNA upstream 16502 17416730 ~ 17423320 (+) False LOC113535983
TU216612 lncRNA upstream 16603 17416770 ~ 17423219 (+) False LOC113535983
TU216605 lncRNA upstream 28397 17408545 ~ 17411425 (+) False kcnh1b
TU216521 lncRNA upstream 304823 17121913 ~ 17134999 (+) False si:ch211-126j24.1
TU216632 lncRNA downstream 4209 17450457 ~ 17450736 (+) True G183032
TU216676 lncRNA downstream 131394 17577642 ~ 17583785 (+) False G183058
TU216673 lncRNA downstream 131492 17577740 ~ 17580114 (+) True G183058
TU217213 lncRNA downstream 278515 17724763 ~ 17725260 (+) True G183478
TU217332 lncRNA downstream 441879 17888127 ~ 17888353 (+) True G183566
XM_026922364.2 mRNA upstream 28496 17365698 ~ 17411326 (+) True kcnh1b
XM_026922372.2 mRNA upstream 28496 17365698 ~ 17411326 (+) False kcnh1b
XM_026918740.2 mRNA upstream 108572 17281249 ~ 17331250 (+) True mark1
XM_026929441.2 mRNA upstream 162367 17240492 ~ 17277455 (+) True ptk7a
XM_026933142.2 mRNA upstream 204134 17224426 ~ 17235688 (+) True soul4
XM_026930276.2 mRNA downstream 152 17446400 ~ 17449781 (+) True commd2
XM_026919303.2 mRNA downstream 7534 17453782 ~ 17497179 (+) True wwtr1
XM_026919313.1 mRNA downstream 7899 17454147 ~ 17494888 (+) False wwtr1
XM_026917998.2 mRNA downstream 60959 17507207 ~ 17532678 (+) False LOC113528887
XM_034308402.1 mRNA downstream 60977 17507225 ~ 17532678 (+) False LOC113528887
XR_003402991.2 other upstream 223939 17196280 ~ 17215883 (+) False LOC113528769
trnak-cuu_26 other upstream 409878 17029872 ~ 17029944 (+) True trnak-cuu_26
TU216450 other upstream 516900 16913258 ~ 16922922 (+) True G182877
TU216336 other upstream 854879 16583303 ~ 16584943 (+) True G182819
XR_003403746.1 other upstream 859519 16580236 ~ 16580303 (+) True LOC113537281
XR_004579126.1 other downstream 152216 17598464 ~ 17636395 (+) True anos1b
XR_004579060.1 other downstream 225923 17672171 ~ 17751502 (+) True mcf2l2
XR_003403373.2 other downstream 225923 17672171 ~ 17749291 (+) False mcf2l2
TU217273 other downstream 327465 17773713 ~ 17781813 (+) False ect2
TU217312 other downstream 349197 17795445 ~ 17796619 (+) True G183549

Expression Profile