RNA id: XM_026927834.2


Basic Information

Item Value
RNA id XM_026927834.2
length 3856
RNA type mRNA
GC content 0.47
exon number 24
gene id ect2
representative False

Chromosome Information

Item Value
chromosome id NC_047605.1
NCBI id CM018551.1
chromosome length 26640196
location 17754176 ~ 17781814 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TCTCAGCCAATGAGCGCGCGGCTGCTCGGCTTGCTCCGCGTTTTGAATTCGGGAAAGTGAGTTGAATACGGTGCGACGTACAATGCCTTAATTAAGATGGACTTAAAGTTTAGACTTGTTTCATAATATTGTTTTAACTTGTCGGAAGACTTTTTCTTCGGAGCTAAACGGAATAAGAGCCACTTTTATTACTGAGCGATAACTTTGTTTTGTCCCGCTTGGTAAGTTAGTAGCAGAGTCTAAACTAGCAAGTGTGCTAGGTAGCTAACctgcttagcttagcttagctggTCAAGCAGCCAGCTGAACTCGGCGCTAGTCTCGGCTTGGGCAAGTTTTCAGCAACACTTTTACAACGTCTGCTTGCTGTTGAGCTCTCGAATCGGGTCGTGACGCCATGGCCGACAGCACTTTGGGGACGGTCCGGAGCCTGCTCGTGGACTCATCTGTCTTTGACTCCAGAATGGCGGAGACCTCCAAGGAGCACACGTTCCTCGGTCTGACCTCGGACGACGCAGAGGAAATGCTGCGGCGAGTGGAGACCAGGGTTGTGCTTGTGGGGGAAGCGGACAGCGACGCTGCACTTGTAAAGGCGCTTGAGGATATAAACGTCCCCTGTATAAAGACAGACAATGTCAGAGAGTTTGGGGATGGAGAAAACGCTGAGTACGAGACAGTCTTTGTACTGAAGGACTTCCAGTCTCCTGACTACAGCTATTTATACAAAAATGACAACCGCATTTTGGGCCCCCCTGTGGTACTGCATTGTGCTGGGAAGGGAGAGcCGCTGCCATTCTCGTCCCGTCCTCTGTACTCCACCACCATGCTCAACTTATCGCTCTGTTTCACTGGCTTCCGCAAGAAAGAGGAAGTGgtaAACCTAGTTAACCTGGTGCATCATATGGGCGGCACCATCCGCAAGGACTTCAGTGCTAAAGTCACCCATCTCATTGCCCATTCCACTCATGGGGAGAAATATAGGTTGGCTGTGTGCATGGGTACACCCATTCTCACTCCAGACTGGATTCATAAGGCCTGGGAGCACAAGGATAACATCAATTTTCACGCAGGCGATGAGGAGTTCCGTATGGCCTTCAAAGTGCCGCCGTTTCAGGACTGCGTTCTGAGCTTTTTGGGATTctctgaggaggaaaaaagcaaTATGGAGGAAAGGACGCTGAAGCACGGTGGCCACTTTCTGGAGGTCGGAGATGAGAAGTGCACTCACCTGGTGGTGGAGGAGAACTCCATTAAAGAGCTGCCCTTTGTGCCATCTAAGAGACTGTATGTTGTAAAACAGGAGTGGTTTTGGGGCAGTATCCAGATGGATGCTCGAGCTGGGGAATCTATGTATTCATATGAGAAgTCGGAGAGCCCGGCGATGAAGAAGGCCGTGTCCCTTCTTTCTCTCACGACGCCCACCAGTAATCGGAAGCGGCGGCGTCTGCGTGACACTCTGGCCCAACTCGCTAAAGAGACCGAGATCTCGCCCTTCCCCCCTCGCAAGAGGCCCTCGGCAGAGCACTCACTCTCTATGGGCTCGCTGTTGGACATCTCTAACACTCCTGACACATGCAAGGCTTTGACAGAGAACTCCAAACCCTCCAAAAGCTCCACACCTGTGCTGCCCAAGCAGTCGGCAAGATGGCAGGTGTCCAAGGAGCTGTACCAGACTGAGAGCAACTACGTGGATATCCTGGCTACAGTCCTGCAgCTTTTCAAGTATCCACTGGAGAAAGAAGGGCAGGTCGGAGGCCCCATCCTGGCTCAAGAAGAGATTAAAACCATCTTTGGCAGCATCCCAGACATTTATGAAGTGCACACCAGGATAAAGGCGGACCTGGAAGAGCTGGTGATGAACTGGTCAGAAGACAAGAGTGTCGGTGACATCATTCTGAAATATTCCGGAGAGCTGGTGAAAGCTTACCCCCCTTTTGTCAACTTCTTTGAGATGAGTAAGGAGACGATTGTGAGGTGTGAGAAGCAGAAGCCCAGGTTTCACGCATTCCTAAAGATCAATCAGGCTAAACCTGAGTGTGGGCGGCAGACGCTGGTGGAGCTGATGATACGTCCTGTTCAGAGATTGCCTAGCGTGGCTCTCTTACTCAATGATATTAAAAAGCATACCTCTGATGATAATCCTGATAAAGTCACTCTGGAAAAGGCCATAGAGTCCCTCAAAGAAGTTATGACACATATAAATGAAgacaagagaaagacagaaggccAGAAGCAGATCTTTGATGTGGTTTATGAAGTGGATGGCTGCCCTgccAATCTTTTGTCTTCTCATCGGAGTCTGGTGCACAGAGTGGAGACCATTGCTCTAGGAGACAAGCCCTGCGACCGCGGCGAACATGTCACTCTATTTCTCTTCAATGACTGCCTGGAGATTGCCAGGAAGAGGCATAAGGTGATCAGCACCTTTAAGAGTCCTCTGGGGCAAACGCGGCCACCTGCTCAGCTCAAGCACATCACCCTCATGCCCCTGTCTCAGATCCGCAGGGTGCTGGACCTGCGTGACACAGAGGACTGTCAGAACGCCTTTGCCCTGGTTGTGCGGCCTCCTACCGAGCAGGAGAACCTCCTCTTTAGTTTCCAACTCGCTGCTGAAGACACGCTCAAGTCGACCTGGCTCAAGACTCTCTGCCGTCAAGTGGCAAACACCATCTGCAGGGCTGACGCGGAAGACCTAATTCAGTGCACCGATCCTGACACCCTTCAAGTGAGCACGAAGGACATGGACAGCACACTGAGTCGAGCCTCGAGGGCCATCAAAAAGACATCAAAGAAGGTCACCAGGGCCTTCTCTTTCACCAAAACCCCTAAGCGTGTGATCCAGAGAGCTTTCATGGCCAGCAGTACCCCAGATGACAAGAGCCCTGGCACAGGCCTTGATCATATGACTCGAATGACTAGCAGCTCCACACTGgctGCTGTGCACTCACCATCGATGGTCAATCTGTCATCTGCGTTCGAGAGGAAGTACCACACCTTTAGCAGGTCAACCACTCACCTGATCTGATGTGTATGCCTTAACCTGTTTCCCTGCTCTGACTAAACAACTAAAGAACTTCTACACAGTGGTACAGTGCTGCTCAGATCACTGCTCTCTGACTTCCAAATGAAGGATCATTCTCataatttgtgtttttcctgttactaacatattcatatattttggGCACTTTGATCTAACAGAGAAATGTTAATAACTGACATTTTCAGGCTATTTTTTAGAGAAATAGATTTTCACATTATTAACCAATGAAAGTATTTCTTAACGTTGTATGGGGAAGCCTATCTCAGCTACTTAAGTTTCCAGCTTTTATAAAGCTACAAAACTAAGtacttttaatataaatggGTTAAGAAAAACGATGGTAAGTCACTGTAGTAAAACCATTGCTCAAGTTTCACATATTGTAaaagtattttcttttattttttaaatggactAGATCGTTTGTTTTGAACGAGCAAAAAAGTGGAGCTGCGTACAGTGTGCATATTTATTCTCTAGAATAAatcatctatatatatatatatatatatagtatatgtcaATCCTATAACGTTTcctttgtttgtatttatgtgTAAATAGGGTCCTTTTTTCATTTGTGGTAGTGTCATTCCAATGATTGTTTTTCCTATTTCTTGAATGTCACGTTTTTAACTGTCACTGTAATGGCCTTTCAAAACCTGTACAAACTccccttttccttttcttactGTATTGAAGTTACATGTTGTCTTTGTAAATGGTCTGTAATGATTTTTGGAAATTGCTTTTATGTTTGACATTGTTGATTTACTCGTTTCCAATAAAAGACGGATGTAGCCAATAAATGAA

Function

GO:

id name namespace
GO:0000902 cell morphogenesis biological_process
GO:0000910 cytokinesis biological_process
GO:0035023 regulation of Rho protein signal transduction biological_process
GO:0045666 positive regulation of neuron differentiation biological_process
GO:0005634 nucleus cellular_component
GO:0005737 cytoplasm cellular_component
GO:0005096 GTPase activator activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU217213 lncRNA upstream 28918 17724763 ~ 17725260 (+) True G183478
TU216676 lncRNA upstream 170393 17577642 ~ 17583785 (+) False G183058
TU216673 lncRNA upstream 174064 17577740 ~ 17580114 (+) True G183058
TU216632 lncRNA upstream 303442 17450457 ~ 17450736 (+) True G183032
TU216612 lncRNA upstream 330959 17416770 ~ 17423219 (+) False LOC113535983
TU217332 lncRNA downstream 106313 17888127 ~ 17888353 (+) True G183566
TU217344 lncRNA downstream 120971 17902785 ~ 17902984 (+) True G183578
TU217351 lncRNA downstream 134189 17916003 ~ 17916210 (+) True G183585
TU217463 lncRNA downstream 384808 18166622 ~ 18237120 (+) False LOC113526284
TU217556 lncRNA downstream 647692 18429506 ~ 18437961 (+) True G183787
XM_026924630.2 mRNA upstream 2676 17672171 ~ 17751502 (+) False mcf2l2
XM_026928425.2 mRNA downstream 96426 17878240 ~ 18133981 (+) False nlgn1
XM_034308974.1 mRNA downstream 152102 17933916 ~ 18133981 (+) True nlgn1
XM_026928415.2 mRNA downstream 152102 17933916 ~ 18133981 (+) False nlgn1
XM_034308975.1 mRNA downstream 152102 17933916 ~ 18133981 (+) False nlgn1
XM_026928435.2 mRNA downstream 152102 17933916 ~ 18133981 (+) False nlgn1
XR_004579060.1 other upstream 2676 17672171 ~ 17751502 (+) True mcf2l2
XR_003403373.2 other upstream 4887 17672171 ~ 17749291 (+) False mcf2l2
XR_004579126.1 other upstream 117783 17598464 ~ 17636395 (+) True anos1b
TU216628 other upstream 309119 17439796 ~ 17445059 (+) False LOC113536271
XR_003402991.2 other upstream 538295 17196280 ~ 17215883 (+) False LOC113528769
TU217312 other downstream 13631 17795445 ~ 17796619 (+) True G183549
TU218227 other downstream 1473143 19254957 ~ 19269222 (+) False adgrl4
TU218488 other downstream 1750267 19532081 ~ 19553522 (+) False si:ch73-40i7.5
TU218486 other downstream 1768568 19550382 ~ 19553522 (+) False si:ch73-40i7.5
TU218602 other downstream 1913430 19695244 ~ 19700274 (+) True rps15

Expression Profile