RNA id: TU218141


Basic Information

Item Value
RNA id TU218141
length 206
lncRNA type inter_gene
GC content 0.50
exon number 1
gene id G184309
representative True

Chromosome Information

Item Value
chromosome id NC_047605.1
NCBI id CM018551.1
chromosome length 26640196
location 19012407 ~ 19012612 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GGCAGGTAGAGGTAACAAGGGCAGAACAGCATGCGCGAGGATGCTCCCTGTGTCGACACACAGTTATAATAGCAGTCTCAGCTGGGGCTGTGCTTTTTCCCAGAGCAGAAAAACAATAAGACAGGTCTGGACGCTCCTGTCAAGGGGaattggaataaaacacacaggcacCGAGTAGATTGTAGGCACCCAACTCTAGCATTGTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU217958 lncRNA upstream 117532 18891239 ~ 18894875 (+) True G184167
TU217565 lncRNA upstream 407485 18598718 ~ 18604922 (+) True G183796
TU217566 lncRNA upstream 415167 18593698 ~ 18597240 (+) True G183797
TU217567 lncRNA upstream 423691 18576732 ~ 18588716 (+) True G183798
TU217575 lncRNA upstream 442448 18568625 ~ 18569959 (+) True G183805
TU218173 lncRNA downstream 68640 19081252 ~ 19081485 (+) True G184340
TU218370 lncRNA downstream 447206 19459818 ~ 19461690 (+) True G184504
TU218369 lncRNA downstream 449212 19461824 ~ 19462843 (+) True G184503
TU218362 lncRNA downstream 473760 19486372 ~ 19487778 (+) False smim7
TU218363 lncRNA downstream 473760 19486372 ~ 19487778 (+) True smim7
XM_034308722.1 mRNA upstream 41860 18912318 ~ 18970547 (+) True ttll7
XM_034308724.1 mRNA upstream 41860 18912318 ~ 18970547 (+) False ttll7
XM_034308723.1 mRNA upstream 41860 18912633 ~ 18970547 (+) False ttll7
XM_034308725.1 mRNA upstream 41860 18912897 ~ 18970547 (+) False ttll7
XM_026918120.2 mRNA upstream 135331 18865130 ~ 18877076 (+) True uox
XM_026933503.2 mRNA downstream 242319 19254931 ~ 19270261 (+) True adgrl4
XM_034308787.1 mRNA downstream 259340 19271952 ~ 19287643 (+) True vtg3
XM_034308908.1 mRNA downstream 276655 19289267 ~ 19297548 (+) True LOC113533188
XM_026928468.2 mRNA downstream 288009 19300621 ~ 19309461 (+) True mpv17l2
XM_026910829.2 mRNA downstream 306675 19319287 ~ 19322971 (+) False LOC113524462
TU217312 other upstream 1215788 17795445 ~ 17796619 (+) True G183549
TU217273 other upstream 1230594 17773713 ~ 17781813 (+) False ect2
XR_004579060.1 other upstream 1260905 17672171 ~ 17751502 (+) True mcf2l2
XR_003403373.2 other upstream 1263116 17672171 ~ 17749291 (+) False mcf2l2
XR_004579126.1 other upstream 1376012 17598464 ~ 17636395 (+) True anos1b
TU218227 other downstream 242345 19254957 ~ 19269222 (+) False adgrl4
TU218488 other downstream 519469 19532081 ~ 19553522 (+) False si:ch73-40i7.5
TU218486 other downstream 537770 19550382 ~ 19553522 (+) False si:ch73-40i7.5
TU218602 other downstream 682632 19695244 ~ 19700274 (+) True rps15
XR_004579107.1 other downstream 815374 19827986 ~ 19834414 (+) False tax1bp3

Expression Profile