Gene
RNA
| Item | Value |
|---|---|
| RNA id | TU218362 |
| length | 874 |
| lncRNA type | sense_over |
| GC content | 0.38 |
| exon number | 5 |
| gene id | smim7 |
| representative | False |
| Item | Value |
|---|---|
| chromosome id | NC_047605.1 |
| NCBI id | CM018551.1 |
| chromosome length | 26640196 |
| location | 19486328 ~ 19487784 (+) |
| genome version | GENO_Phyp_1.0_2019_striped_catfish_Genome |
| species | striped catfish (Pangasianodon hypophthalmus) |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU218369 | lncRNA | upstream | 23529 | 19461824 ~ 19462843 (+) | True | G184503 |
| TU218370 | lncRNA | upstream | 24682 | 19459818 ~ 19461690 (+) | True | G184504 |
| TU218173 | lncRNA | upstream | 404887 | 19081252 ~ 19081485 (+) | True | G184340 |
| TU218141 | lncRNA | upstream | 473760 | 19012407 ~ 19012612 (+) | True | G184309 |
| TU217958 | lncRNA | upstream | 591497 | 18891239 ~ 18894875 (+) | True | G184167 |
| TU218480 | lncRNA | downstream | 39099 | 19526877 ~ 19545502 (+) | False | LOC113546543 |
| TU218491 | lncRNA | downstream | 60885 | 19548663 ~ 19602639 (+) | True | G184614 |
| TU218492 | lncRNA | downstream | 60885 | 19548663 ~ 19550326 (+) | False | G184614 |
| TU218481 | lncRNA | downstream | 66199 | 19553977 ~ 19554818 (+) | False | si:ch73-40i7.5 |
| TU218499 | lncRNA | downstream | 173314 | 19661092 ~ 19664491 (+) | True | G184617 |
| XM_026930849.2 | mRNA | upstream | 28198 | 19442164 ~ 19458174 (+) | True | crtc1b |
| XM_034308396.1 | mRNA | upstream | 28198 | 19442164 ~ 19458174 (+) | False | crtc1b |
| XM_026930857.2 | mRNA | upstream | 28198 | 19442165 ~ 19458174 (+) | False | crtc1b |
| XM_026919525.2 | mRNA | upstream | 47191 | 19429911 ~ 19439181 (+) | True | klhl26 |
| XM_026919355.2 | mRNA | upstream | 70197 | 19405686 ~ 19416175 (+) | True | rab3ab |
| XM_026928296.2 | mRNA | downstream | 2654 | 19490432 ~ 19495901 (+) | True | LOC113535100 |
| XM_026929979.2 | mRNA | downstream | 10585 | 19498363 ~ 19505101 (+) | True | slc35e1 |
| XM_034308463.1 | mRNA | downstream | 21255 | 19509033 ~ 19524997 (+) | True | si:ch73-40i7.2 |
| XM_034308528.1 | mRNA | downstream | 39268 | 19527046 ~ 19531687 (+) | True | LOC117595669 |
| XM_034308909.1 | mRNA | downstream | 55691 | 19543469 ~ 19548212 (+) | True | LOC113546543 |
| TU218227 | other | upstream | 217150 | 19254957 ~ 19269222 (+) | False | adgrl4 |
| TU217312 | other | upstream | 1689753 | 17795445 ~ 17796619 (+) | True | G183549 |
| TU217273 | other | upstream | 1704559 | 17773713 ~ 17781813 (+) | False | ect2 |
| XR_004579060.1 | other | upstream | 1734870 | 17672171 ~ 17751502 (+) | True | mcf2l2 |
| TU218488 | other | downstream | 44303 | 19532081 ~ 19553522 (+) | False | si:ch73-40i7.5 |
| TU218486 | other | downstream | 62604 | 19550382 ~ 19553522 (+) | False | si:ch73-40i7.5 |
| TU218602 | other | downstream | 207466 | 19695244 ~ 19700274 (+) | True | rps15 |
| XR_004579107.1 | other | downstream | 340208 | 19827986 ~ 19834414 (+) | False | tax1bp3 |
| XR_003403385.2 | other | downstream | 378020 | 19865798 ~ 19871463 (+) | True | ccl44 |
