Gene
RNA
| Item | Value |
|---|---|
| RNA id | TU218480 |
| length | 537 |
| lncRNA type | read_through |
| GC content | 0.42 |
| exon number | 3 |
| gene id | LOC113546543 |
| representative | False |
| Item | Value |
|---|---|
| chromosome id | NC_047605.1 |
| NCBI id | CM018551.1 |
| chromosome length | 26640196 |
| location | 19526877 ~ 19548212 (+) |
| genome version | GENO_Phyp_1.0_2019_striped_catfish_Genome |
| species | striped catfish (Pangasianodon hypophthalmus) |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU218362 | lncRNA | upstream | 39099 | 19486372 ~ 19487778 (+) | False | smim7 |
| TU218363 | lncRNA | upstream | 39099 | 19486372 ~ 19487778 (+) | True | smim7 |
| TU218369 | lncRNA | upstream | 64034 | 19461824 ~ 19462843 (+) | True | G184503 |
| TU218370 | lncRNA | upstream | 65187 | 19459818 ~ 19461690 (+) | True | G184504 |
| TU218173 | lncRNA | upstream | 445392 | 19081252 ~ 19081485 (+) | True | G184340 |
| TU218491 | lncRNA | downstream | 3161 | 19548663 ~ 19602639 (+) | True | G184614 |
| TU218492 | lncRNA | downstream | 3161 | 19548663 ~ 19550326 (+) | False | G184614 |
| TU218481 | lncRNA | downstream | 8475 | 19553977 ~ 19554818 (+) | False | si:ch73-40i7.5 |
| TU218499 | lncRNA | downstream | 115590 | 19661092 ~ 19664491 (+) | True | G184617 |
| TU218615 | lncRNA | downstream | 158133 | 19703635 ~ 19704250 (+) | True | G184718 |
| XM_034308463.1 | mRNA | upstream | 1880 | 19509033 ~ 19524997 (+) | True | si:ch73-40i7.2 |
| XM_026929979.2 | mRNA | upstream | 21776 | 19498363 ~ 19505101 (+) | True | slc35e1 |
| XM_026928296.2 | mRNA | upstream | 30976 | 19490432 ~ 19495901 (+) | True | LOC113535100 |
| XM_026923920.2 | mRNA | upstream | 39093 | 19486328 ~ 19487784 (+) | False | smim7 |
| XM_026930849.2 | mRNA | upstream | 68703 | 19442164 ~ 19458174 (+) | True | crtc1b |
| XM_034308397.1 | mRNA | downstream | 5144 | 19550646 ~ 19554969 (+) | True | si:ch73-40i7.5 |
| XM_026922544.2 | mRNA | downstream | 10210 | 19555712 ~ 19584739 (+) | True | zgc:172302 |
| XM_026922570.2 | mRNA | downstream | 41826 | 19587328 ~ 19597392 (+) | True | r3hdm4 |
| XM_026922559.2 | mRNA | downstream | 53761 | 19599263 ~ 19605614 (+) | True | LOC113531697 |
| XM_034308939.1 | mRNA | downstream | 61945 | 19607447 ~ 19638191 (+) | True | arid3a |
| TU218227 | other | upstream | 257655 | 19254957 ~ 19269222 (+) | False | adgrl4 |
| TU217312 | other | upstream | 1730258 | 17795445 ~ 17796619 (+) | True | G183549 |
| TU217273 | other | upstream | 1745064 | 17773713 ~ 17781813 (+) | False | ect2 |
| XR_004579060.1 | other | upstream | 1775375 | 17672171 ~ 17751502 (+) | True | mcf2l2 |
| TU218486 | other | downstream | 4880 | 19550382 ~ 19553522 (+) | False | si:ch73-40i7.5 |
| TU218602 | other | downstream | 149742 | 19695244 ~ 19700274 (+) | True | rps15 |
| XR_004579107.1 | other | downstream | 282484 | 19827986 ~ 19834414 (+) | False | tax1bp3 |
| XR_003403385.2 | other | downstream | 320296 | 19865798 ~ 19871463 (+) | True | ccl44 |
| TU218923 | other | downstream | 604469 | 20149971 ~ 20150894 (+) | True | G184979 |
