RNA id: XM_034308909.1


Basic Information

Item Value
RNA id XM_034308909.1
length 1236
RNA type mRNA
GC content 0.41
exon number 6
gene id LOC113546543
representative True

Chromosome Information

Item Value
chromosome id NC_047605.1
NCBI id CM018551.1
chromosome length 26640196
location 19526877 ~ 19548212 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

ACAATTTCCTGTTCAAAGTTCACTGTTCATCTGTTTTTGCACTGTGTACAGACTCCTGACTACATTTGTGTAAAGGTTCAACTTGATTTTCGATGAAGACCTaaggctttttttgttttttgaacatttctctgtaaaatatatactttcCACCGCGACAATAATGAGGTAATGCTAGTAAtattagttagttagctagctagctagctgtcccAGGAGCAGGCTGGTGTTTTTGCAGCTCTGTGAGCATAGAGATTAGTTATAATCATGGACAATTCATTTGAATCAGTAGTGAATTTGCTGGAGTCCTACAGAGGAAGAGATAAAGTGATAAGGACAGTATGTTATGGATCGCAGCTGGTTGGTGGCATCATTTCACAAACGGCCAACTCCTCACAGCTCGGCAAGAGTCTCCTGCTCTTCTCAGCTCAGCTCAGTCACTGCCGGACAGTTCTGCGCCTGTTTGATGACCTTTCTATGGCTGCTTTTCAGCGAGCTACGGTCACCGGATCCACGGAGGAGGACAAGGTGCTGCGGTGCATGTCGGTGCTGATTAATGCTGCAGATCAGCTGTATTATCCGTGTGAACACATTGCCTGGGCAGCTGATGCAGAGCTCATTAAAGTCAAGTCTGACAAATGGTGGACACTGAGCACAGTTCTGTGGGGTGTGTCTTTACTTCTGGGCACTCTCAGATCGCTCAGAATAATCCGGAAATTAAAGAAGAAGGCAGAAATTTGGGGAGAGTTTCTTAATATTCTTAGCAGCCTGGCGGATCTGAGCAATGCTATTCATTGGATGCCACCTGGATTTCTTTGGGCTGGTCACTTCCCTGATTGGCTGGTGGGACTAATGGGGACCGCCTCGTCCCTGCTTGGCATGCTGCACATGAGTTCCAGTGATTAAAGTGCCAGCGTCTGACATGATGAACTGTGGGGAcctgaatgaatgttttttttgtttgtttgtttgtttgtttgtttgtttttgcttagAGACTACATATTTCCAATATTTCAGTTTCTTATTAGATTTTACATGGTGATGCAAGCTTCATGATTTCACATAATACACTATAAAAGGTACATGATCAGTTCTGATataatgtatacagtacataattatgtaatatataatcaAGAGACAGATTGTACAGTAAAAGAAATATAGCACTTTAGGTAAAGGATGTGCACTGAGAAAATTGatcaattacaataaaaaaaacaatactttaTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU218362 lncRNA upstream 55691 19486372 ~ 19487778 (+) False smim7
TU218363 lncRNA upstream 55691 19486372 ~ 19487778 (+) True smim7
TU218369 lncRNA upstream 80626 19461824 ~ 19462843 (+) True G184503
TU218370 lncRNA upstream 81779 19459818 ~ 19461690 (+) True G184504
TU218173 lncRNA upstream 461984 19081252 ~ 19081485 (+) True G184340
TU218491 lncRNA downstream 451 19548663 ~ 19602639 (+) True G184614
TU218492 lncRNA downstream 451 19548663 ~ 19550326 (+) False G184614
TU218481 lncRNA downstream 5765 19553977 ~ 19554818 (+) False si:ch73-40i7.5
TU218499 lncRNA downstream 112880 19661092 ~ 19664491 (+) True G184617
TU218615 lncRNA downstream 155423 19703635 ~ 19704250 (+) True G184718
XM_034308528.1 mRNA upstream 11782 19527046 ~ 19531687 (+) True LOC117595669
XM_034308463.1 mRNA upstream 18472 19509033 ~ 19524997 (+) True si:ch73-40i7.2
XM_026929979.2 mRNA upstream 38368 19498363 ~ 19505101 (+) True slc35e1
XM_026928296.2 mRNA upstream 47568 19490432 ~ 19495901 (+) True LOC113535100
XM_026923920.2 mRNA upstream 55685 19486328 ~ 19487784 (+) False smim7
XM_034308397.1 mRNA downstream 2434 19550646 ~ 19554969 (+) True si:ch73-40i7.5
XM_026922544.2 mRNA downstream 7500 19555712 ~ 19584739 (+) True zgc:172302
XM_026922570.2 mRNA downstream 39116 19587328 ~ 19597392 (+) True r3hdm4
XM_026922559.2 mRNA downstream 51051 19599263 ~ 19605614 (+) True LOC113531697
XM_034308939.1 mRNA downstream 59235 19607447 ~ 19638191 (+) True arid3a
TU218227 other upstream 274247 19254957 ~ 19269222 (+) False adgrl4
TU217312 other upstream 1746850 17795445 ~ 17796619 (+) True G183549
TU217273 other upstream 1761656 17773713 ~ 17781813 (+) False ect2
XR_004579060.1 other upstream 1791967 17672171 ~ 17751502 (+) True mcf2l2
TU218486 other downstream 2170 19550382 ~ 19553522 (+) False si:ch73-40i7.5
TU218602 other downstream 147032 19695244 ~ 19700274 (+) True rps15
XR_004579107.1 other downstream 279774 19827986 ~ 19834414 (+) False tax1bp3
XR_003403385.2 other downstream 317586 19865798 ~ 19871463 (+) True ccl44
TU218923 other downstream 601759 20149971 ~ 20150894 (+) True G184979

Expression Profile