RNA id: XM_026927006.2


Basic Information

Item Value
RNA id XM_026927006.2
length 5238
RNA type mRNA
GC content 0.40
exon number 11
gene id LOC113534304
representative True

Chromosome Information

Item Value
chromosome id NC_047605.1
NCBI id CM018551.1
chromosome length 26640196
location 19836145 ~ 19845238 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CTCCCAATTTACTCAACAGAAACCTGTGAAAGTGTGAGAATTTCACTTGTATGTGCAATAAGCTGCATGTCTTTGCACATTTGCAGCCGacccacctcctcctcctcctccttctcctcctccttctcctacAAACGGAATATTAACTAACGGTGTTGCAGCAACCGGTTGCTCTTTTCGCCTGGAGGATGCTTACGCGTCTCTTCCCACCCAAACCTACAAATTTCTCCTTCTTccccaatcagaatcagaaaccaGAATCAGATGTCAGTTAATCATTGTAGGAAGAGCAAGCTGATATAGCAAGACTTTGCTTTGCCTCCTGTCACTCACACTACTTGTCACGACTTCTCATCACTCAACAACAAACAGGCTAAAGTCCTCCAAGTGTTCTCATCATGTGGTGACTGGAAGGTCACAGTGCCACCACTGTTATCTAAAGTCACTGCTACATGAAGAAAACTGAACATTTTCTCAGTAGCTATGCAGAAACAAATGTCTGGAGCCAAGGTGAGGATATGCAAATCATTCCTGCGCCGTAACACATTTGTGCTCTTCACTGTGGCAGCAGTTGTGGTTGGAATCGCGTTGGGATTTGTTCTGCGACCTCACAACTTATCCTTGagggaaataaaatatttctcctTCCCTGGGGAGCTACTGATGAGGATGTTACAGATGCTAGTCCTTCCACTAATTGTGTCCAGTCTTGTTACAGGTATTTCTTCCTTGGATAGTAGAGCTTCTGGAAAGATGGGAGCACGGGCTATTATTTACTATATGGTGACCACTTTCATTGCTGTTTTCATTGGTATTGTCATGGTGATCATCATAAAGCCTGGAAAAGGCAACAGAGACAATCCAATGTCCTCAAGTGGCAGCATTGAATCAGTGCAAGCTGCTGATGCCTTTCTGGACCTTATTAGaaATATGTTTCCACCTAATTTAGTGGAAGCCTGTTTCAAACAGTACAAAACTCTTTACAAGAAAACAGTTTTCACAAAGGACATCACAGTTTTAATCAATGCAAGTCAGGACACTAATGCCACCAAGTTCAGCCAGGTGGGAAATTACAGCGCAGTCCTGCAGACCATCCAGGAAACTGTGGAGGAGGTGATTCCAGTCTCAGGCTCCTCTAATGGAGTGAATGCTTTAGGTCTGGTGGTGTTTTCTATGTTCTTTGGCTTAGTGATTGGGAATATGAAGCAGCAGGGTCAGCCACTGAAAGAATTCTTCGATTGCCTCAATGATGCCATAATGCGCTTGGTAGCAATCATAATCTGGTACGCGCCAGTTGGTATCCTCTTTCTAATTGCTGGAAAGATCATTGAGATGAAAGACCTGGCACAGGTTGGAGGGCAGCTTGGCATGTACACAGTCTGTGTCATCATTGGTTTACTCATCCATGGTCTCTTCATTCTGCCCTTGCTATTCTTCCTGATTACTCGGAGAAACCCCTACACATTTATTGGTGGTCTAATCCAGGCTTTGGTTACTGCCTTAGGAACATCTTCCAGTTCGGCCACGCTTCCCATCACCTTCCGTTGCTTAGAGGAGAACAACCATGTGGACAAACGTGTAACACGGTTTGTTTTGCCTGTGGGAGCCACCATAAACATGGATGGTACAGCTTTATATGAAGCAGTGGCTGCCATTTTCATAGCCCAAGTTAATAGCATGGACCTGAACTTTGGGCAAATCCTTACCATCAGTATCACAGCGACTGCTGCCAGCATTGGAGCAGCAGGTATTCCTCAGGCTGGTCTGGTAACCATGGTGATTGTATTGACATCCGTGGGACTGCCCACCGAGGACATAACACTCATCATTGCTGTGGATTGGTTCTTggATCGCCTCAGAACCACTACCAATGTGCTGGGAGACTCCTTGGGAGCTGGTATCGTGGAACATCTGTCACGACAGGAACTGCAGAAACTGGACACAGATACTGGCAACTCTGAGACTGAGGAGAACAAAAAGCCTTATCAGCTCATCTGCCAGGAGGACGACTGGCTTGGGCACCAAAACAGTGAGAGTACAATGTAAAAGATCATAATACAGAGACAGGCTGTTAGGGAGAACATCTGAAAACATATTATTAGATGTTACACCATATTAGCATGTTCAAAAATAAGTACGCACACCACACTATTCAGCCTTATAATGAGAGATCAACTCTGAGTATCCAAGCATTTTTCACCAATTACAGCATGTGATATTACATACCACAATTCAACACTTAGAGAAGGATTTGTTGGATAGTGGAGTGTtaaatgctatggctaaacTATGAACTAAATTTGGTTCCCTAAAAAACCTTTCAGTCAATAAGTTCTTACCATCATTTTCCACCACAAAGATCCTTCAACATAATGGTAACATTTAtggtgtgatttttattttatggcgTCACTCTAAAGAACTTTTTCTGGTACTTTAGTTTTTAAGAGTATAGACCATTTAAAAgtttccccagagggacaaacattagattcagctttttttctaagagtgtagtaAGTTTGTATTTTTGATTACAAGTACATAGCATTTCTTATGAGCCAGACTTTATAAAAGGTTTTGTATTAATAAATCATCAAAGTGATTCTGTATCATGAATATTTGCAGTGGTGGAATTACCATTTAAAGAGAGAAGTAAAAGGCACAGtaatatttacaatgtaaatgTTATACAGAACAGTAACTGTGGTTGCACTAACTactggctctggatccaccgtgacccttaccagaataaagtggttactatGATGAATGAAAATCTTACCTCACATTGCCGCACAGCActgtcattcattttcacttacATTGTCgatacaaataatatttaaataacactgaTTGTGGTTTTGTTAATTCATATTTAAGTCTGCATTTTATTCCAGTttgatgttaatatattatactgttttattttatttggagtCATATTTTGAGTCAAAcgtttttttacatttaattttgttagaTTTTGTTGTTAGTCAATAGTTTTTGTCAAAATTCTACAACAGATTTAGCAATGGTGTTGAATGATAGAAACACTCATGCACAGTCAAGTATGCAGTTGTAGGACTGGTGGTTACTGCCTCTATGCTCAGCTCTTATTCATTTATGGCATTGTTTCCAATTTAATGTAGGCCTAATTATACGTAGTATCTCGCACGttaaatattatgattttaaaattcaggGGTAATATTTTAAGTGGTTATCCTTGATTTCAAATATAAAGGTATGCGTATGCAGTGCCTCCTGAAAATATCCAACTCCAGTATATTGACATAATAAGTTGAATAGAATAAGCCATCCTGCAAgtacatactgtactgtatgtgcctCCATAAACAAAATGGAGGGTGACGCAGAAGGGAAAAGACATAATACATGGTTGATAGTAGATGTTTATTGTGTCTTTGGAAATGGAAAGCTTCCAAAATGACAACATAATACCTCATTGTGAACAATCAGACCTGCCTGTTCTTTAAACCATGAACATAATTGTAACTTACCAACCGTCATGGAAACTTTGAGTGGAACATGAACCcttatttataaatgatatgTGCTTAAATTGTGTATATAAACCTTTCAAGGCATGTGGGATTtatcaaaataaacatttacttaaATGCTACCCCCTGCGTCGCCATGCCGCCCTTAAAACGGATATTTCCCAACCATTGCGCAGGACTGCGCACAGTGCTAAATATCATACATTCTCTTGGCCCAATCTAACCACTTCCCctacagtgaaatgaaatagaCAGATGTGAAACAGGACTTGCATGCAATCACTCTTTTTCCTGACATCGGTAGCTTGACTGCATTCTTGCATGCAGGTAAATCAAAAATCAATTTGCTTATATTCTGTATATCCCAAGGGTTTTCCTTCTGTAATAATTATTAGAAACTTGTTTTTGCTCATAAGCTAGGCAAAAGGTATACGAACATCAAAAGCAAAGTTTAATAGGAAGTTTGTTGCAGAAACCTGCAGGAGTGTCTCTTGTTAGTGTGGCTGTTGCAGAAGATAAGCTTTTCGCATGCCAAAACGCCATGAATTTTTTAATTGGCTCCCTTCTTCTGATGTGGACCATGCAGTCAAGCAACCATGCACCCATCCTGAAACAACTCTAGTCTGCTTAATATCAGGATATCCCCaagtggagagaggaaaacCAAAAAACTGGAAGGTATCCCAGGACCTTTTTCACCGACCAATTCAGTTACACCATCAGTTTGACTTCCACAAGTTGAACACTGTTTCTAAATTTGATGCTTATTGAATACCTCATATTGACAAGCGCCTGGATCTGCTGAGCGTGGCCCGTTCATAGATAAGAACTTTATGTAGACAATTTATGCTTGTCACAGCACACTGTAATAGCCCAATACCTCCACTGTCCATCAGAGGGCTCAGTTTCCGGTTTTCTAGTTCGTTTCCATATCTAGTCAACATGTGTACCTGTTTACTCTCTGCCTAGGCAAGTATAACTCCATTCTCTCCAGTAttcattgcaaagtcttgccgTTTTATCCTAGCCTGTGTCATTTTATCCATGACCTTTGATACAGTCTCTTGCCAGTTCTCACTTGGTCTACTGTAATGCACCATTCACTGAGCttgcaaaaatattcatatctacGGTCTACAACGGGTACAAGATAGTAACCTATGTTTGCAAAACTCAACAATGTATTAGAGCTGTTACATGAAAGCTCTTCACTTGCCTCCTGTTTTACAACAAACTGTTTTCCTGTCTTAAGCATTTGTACATCTCAGACTGCTTGACAGAATATAGCTTTGCTTTTTAAGTGCTTAACTGTCAAATGTACCAAAGTGTTaaatgcttatttaaaaaaaaaaagcaagggtACCTTCCATTAAGATTTCAAATGCAAGACTTCTGtaacaaatgcttttttttcttgctttttcctCTTTATCTAAATTGCcatataaataaaggttattgTTAGTGTCAGTTGTAATTTAACAGCATTTGTGGTTTTGGGATCGTTAGAACTTTGACTGGAATCTAGATTAAAATAGaaatttttagatgttttgttGAGGAGTGTTTTAAAGCAATAGccaagaactgtgtgtgtgtgtgtgtgtgtgtgtgtgtactccaACCTCATCAAACTTAATATTGTCACAGACAAGATTGTGATAAAAAGTCACTCATTTTCATACATTGTAGACATTCCATGAGA

Function

GO:

id name namespace
GO:0006835 dicarboxylic acid transport biological_process
GO:0016020 membrane cellular_component
GO:0017153 sodium molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU218741 lncRNA upstream 26891 19808713 ~ 19809254 (+) True G184823
TU218615 lncRNA upstream 131895 19703635 ~ 19704250 (+) True G184718
TU218499 lncRNA upstream 171654 19661092 ~ 19664491 (+) True G184617
TU218481 lncRNA upstream 281327 19553977 ~ 19554818 (+) False si:ch73-40i7.5
TU218492 lncRNA upstream 285819 19548663 ~ 19550326 (+) False G184614
TU218810 lncRNA downstream 76233 19921471 ~ 19947483 (+) True G184882
TU218828 lncRNA downstream 109356 19954594 ~ 19955040 (+) True G184900
TU218933 lncRNA downstream 419698 20264936 ~ 20265620 (+) True G184988
TU218932 lncRNA downstream 420470 20265708 ~ 20320904 (+) True G184987
TU218936 lncRNA downstream 421361 20266599 ~ 20271344 (+) True LOC117598445
XM_026928996.2 mRNA upstream 1731 19827987 ~ 19834414 (+) True tax1bp3
XM_026922981.2 mRNA upstream 27787 19799656 ~ 19808358 (+) False nr2f6b
XM_026922974.2 mRNA upstream 27787 19799658 ~ 19808358 (+) True nr2f6b
XM_034308741.1 mRNA upstream 39977 19781228 ~ 19796168 (+) False ushbp1
XM_026918792.2 mRNA upstream 39977 19783734 ~ 19796168 (+) True ushbp1
XM_026925573.2 mRNA downstream 9447 19854685 ~ 19860286 (+) True pole4
XM_026924845.2 mRNA downstream 20560 19865798 ~ 19871463 (+) False ccl44
XM_026929380.2 mRNA downstream 58920 19904158 ~ 19911209 (+) True ctns
XM_026929071.2 mRNA downstream 114463 19959701 ~ 19964557 (+) True LOC113535596
XM_026926350.2 mRNA downstream 124319 19969557 ~ 19971347 (+) True gadd45ba
XR_004579107.1 other upstream 1731 19827986 ~ 19834414 (+) False tax1bp3
TU218602 other upstream 135871 19695244 ~ 19700274 (+) True rps15
TU218488 other upstream 282623 19532081 ~ 19553522 (+) False si:ch73-40i7.5
TU218486 other upstream 282623 19550382 ~ 19553522 (+) False si:ch73-40i7.5
TU218227 other upstream 566923 19254957 ~ 19269222 (+) False adgrl4
XR_003403385.2 other downstream 20560 19865798 ~ 19871463 (+) True ccl44
TU218923 other downstream 304733 20149971 ~ 20150894 (+) True G184979
XR_004579103.1 other downstream 1344548 21189786 ~ 21210539 (+) False wipf2a
trnap-agg_1 other downstream 2113650 21958888 ~ 21958959 (+) True trnap-agg_1
trnaq-uug_2 other downstream 4087628 23932866 ~ 23932937 (+) True trnaq-uug_2

Expression Profile