RNA id: TU218810


Basic Information

Item Value
RNA id TU218810
length 203
lncRNA type inter_gene
GC content 0.38
exon number 2
gene id G184882
representative True

Chromosome Information

Item Value
chromosome id NC_047605.1
NCBI id CM018551.1
chromosome length 26640196
location 19921471 ~ 19947483 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CTCAGTGAGGAATTATctaatttaagtgattttggaacgtacccattgctcagtgaggagttaactattttaagcaggggttcagttacggttccaactatttgcttaagaagacgtgttggtaccggatctaatagacaggttgatgatttagcagaagagataagcgagattaaatcattctcttcaagaggagtaaaact

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU218759 lncRNA upstream 76671 19844047 ~ 19844800 (+) False LOC113534304
TU218741 lncRNA upstream 112217 19808713 ~ 19809254 (+) True G184823
TU218615 lncRNA upstream 217221 19703635 ~ 19704250 (+) True G184718
TU218499 lncRNA upstream 256980 19661092 ~ 19664491 (+) True G184617
TU218481 lncRNA upstream 366653 19553977 ~ 19554818 (+) False si:ch73-40i7.5
TU218828 lncRNA downstream 7111 19954594 ~ 19955040 (+) True G184900
TU218933 lncRNA downstream 317453 20264936 ~ 20265620 (+) True G184988
TU218932 lncRNA downstream 318225 20265708 ~ 20320904 (+) True G184987
TU218936 lncRNA downstream 319116 20266599 ~ 20271344 (+) True LOC117598445
XR_004579121.1 lncRNA downstream 320063 20267546 ~ 20294374 (+) False LOC117598445
XM_026929380.2 mRNA upstream 10262 19904158 ~ 19911209 (+) True ctns
XM_026924845.2 mRNA upstream 50008 19865798 ~ 19871463 (+) False ccl44
XM_026925573.2 mRNA upstream 61185 19854685 ~ 19860286 (+) True pole4
XM_026927006.2 mRNA upstream 76233 19836145 ~ 19845238 (+) True LOC113534304
XM_034308398.1 mRNA upstream 76233 19836145 ~ 19845238 (+) False LOC113534304
XM_026929071.2 mRNA downstream 12218 19959701 ~ 19964557 (+) True LOC113535596
XM_026926350.2 mRNA downstream 22074 19969557 ~ 19971347 (+) True gadd45ba
XM_026920781.2 mRNA downstream 129130 20076613 ~ 20103052 (+) True apc2
XM_034308563.1 mRNA downstream 158227 20105710 ~ 20120357 (+) False zgc:113223
XM_034308564.1 mRNA downstream 168004 20115487 ~ 20120357 (+) False zgc:113223
XR_003403385.2 other upstream 50008 19865798 ~ 19871463 (+) True ccl44
XR_004579107.1 other upstream 87057 19827986 ~ 19834414 (+) False tax1bp3
TU218602 other upstream 221197 19695244 ~ 19700274 (+) True rps15
TU218488 other upstream 367949 19532081 ~ 19553522 (+) False si:ch73-40i7.5
TU218486 other upstream 367949 19550382 ~ 19553522 (+) False si:ch73-40i7.5
TU218923 other downstream 202488 20149971 ~ 20150894 (+) True G184979
XR_004579103.1 other downstream 1242303 21189786 ~ 21210539 (+) False wipf2a
trnap-agg_1 other downstream 2011405 21958888 ~ 21958959 (+) True trnap-agg_1
trnaq-uug_2 other downstream 3985383 23932866 ~ 23932937 (+) True trnaq-uug_2
trnaq-cug_11 other downstream 3986649 23934132 ~ 23934203 (+) True trnaq-cug_11

Expression Profile