Gene
RNA
| Item | Value |
|---|---|
| RNA id | XR_004579121.1 |
| length | 827 |
| lncRNA type | inter_gene |
| GC content | 0.46 |
| exon number | 3 |
| gene id | LOC117598445 |
| representative | False |
| Item | Value |
|---|---|
| chromosome id | NC_047605.1 |
| NCBI id | CM018551.1 |
| chromosome length | 26640196 |
| location | 20266599 ~ 20294374 (+) |
| genome version | GENO_Phyp_1.0_2019_striped_catfish_Genome |
| species | striped catfish (Pangasianodon hypophthalmus) |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU218933 | lncRNA | upstream | 1926 | 20264936 ~ 20265620 (+) | True | G184988 |
| TU218828 | lncRNA | upstream | 312506 | 19954594 ~ 19955040 (+) | True | G184900 |
| TU218810 | lncRNA | upstream | 320063 | 19921471 ~ 19947483 (+) | True | G184882 |
| TU218759 | lncRNA | upstream | 422746 | 19844047 ~ 19844800 (+) | False | LOC113534304 |
| TU218741 | lncRNA | upstream | 458292 | 19808713 ~ 19809254 (+) | True | G184823 |
| TU218987 | lncRNA | downstream | 136755 | 20431129 ~ 20431338 (+) | True | G185042 |
| TU218982 | lncRNA | downstream | 141421 | 20435795 ~ 20436587 (+) | True | G185037 |
| TU219010 | lncRNA | downstream | 212103 | 20506477 ~ 20506680 (+) | True | G185063 |
| TU219046 | lncRNA | downstream | 260482 | 20554856 ~ 20555124 (+) | True | G185092 |
| TU219165 | lncRNA | downstream | 273702 | 20568076 ~ 20568292 (+) | True | G185182 |
| XM_026922496.2 | mRNA | upstream | 86304 | 20171890 ~ 20181242 (+) | True | slc1a8a |
| XM_026920083.2 | mRNA | upstream | 97138 | 20163215 ~ 20170408 (+) | True | LOC113530255 |
| XM_026920096.2 | mRNA | upstream | 104501 | 20153984 ~ 20163045 (+) | True | sgta |
| XM_026926084.2 | mRNA | upstream | 146950 | 20115488 ~ 20120596 (+) | False | zgc:113223 |
| XM_026919781.2 | mRNA | downstream | 253885 | 20548259 ~ 20563932 (+) | True | tmem259 |
| XM_034308874.1 | mRNA | downstream | 422157 | 20716531 ~ 20717902 (+) | True | sid1 |
| XM_034308861.1 | mRNA | downstream | 425057 | 20719431 ~ 20721806 (+) | True | si:ch211-1a19.2 |
| XM_034308487.1 | mRNA | downstream | 511957 | 20806331 ~ 20839589 (+) | False | mast3b |
| XM_034308489.1 | mRNA | downstream | 511957 | 20806331 ~ 20839589 (+) | False | mast3b |
| TU218923 | other | upstream | 116652 | 20149971 ~ 20150894 (+) | True | G184979 |
| XR_003403385.2 | other | upstream | 396083 | 19865798 ~ 19871463 (+) | True | ccl44 |
| XR_004579107.1 | other | upstream | 433132 | 19827986 ~ 19834414 (+) | False | tax1bp3 |
| TU218602 | other | upstream | 567272 | 19695244 ~ 19700274 (+) | True | rps15 |
| TU218486 | other | upstream | 714024 | 19550382 ~ 19553522 (+) | False | si:ch73-40i7.5 |
| XR_004579103.1 | other | downstream | 895412 | 21189786 ~ 21210539 (+) | False | wipf2a |
| trnap-agg_1 | other | downstream | 1664514 | 21958888 ~ 21958959 (+) | True | trnap-agg_1 |
| trnaq-uug_2 | other | downstream | 3638492 | 23932866 ~ 23932937 (+) | True | trnaq-uug_2 |
| trnaq-cug_11 | other | downstream | 3639758 | 23934132 ~ 23934203 (+) | True | trnaq-cug_11 |
| trnaq-uug_3 | other | downstream | 3640261 | 23934635 ~ 23934706 (+) | True | trnaq-uug_3 |
