RNA id: TU218987


Basic Information

Item Value
RNA id TU218987
length 210
lncRNA type inter_gene
GC content 0.50
exon number 1
gene id G185042
representative True

Chromosome Information

Item Value
chromosome id NC_047605.1
NCBI id CM018551.1
chromosome length 26640196
location 20431129 ~ 20431338 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

gtgagccttgggcgccaatgaccctgtcgctagttcactggttgtccttccttggaccacttttggtaggtactaaccactgcataccgggaacaacccacaaggcctgccattttaaagatgctctgacccagtcatctagccatcacaatttggccgttgtcaaagtctctctaatccttacgcttgcccatttttcctgtttccaac

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU218932 lncRNA upstream 110225 20265708 ~ 20320904 (+) True G184987
XR_004579121.1 lncRNA upstream 136755 20267546 ~ 20294374 (+) False LOC117598445
TU218936 lncRNA upstream 159785 20266599 ~ 20271344 (+) True LOC117598445
TU218933 lncRNA upstream 165509 20264936 ~ 20265620 (+) True G184988
TU218828 lncRNA upstream 476089 19954594 ~ 19955040 (+) True G184900
TU218982 lncRNA downstream 4457 20435795 ~ 20436587 (+) True G185037
TU219010 lncRNA downstream 75139 20506477 ~ 20506680 (+) True G185063
TU219046 lncRNA downstream 123518 20554856 ~ 20555124 (+) True G185092
TU219165 lncRNA downstream 136738 20568076 ~ 20568292 (+) True G185182
TU219189 lncRNA downstream 274656 20705994 ~ 20708027 (+) True G185206
XM_026922496.2 mRNA upstream 249887 20171890 ~ 20181242 (+) True slc1a8a
XM_026920083.2 mRNA upstream 260721 20163215 ~ 20170408 (+) True LOC113530255
XM_026920096.2 mRNA upstream 268084 20153984 ~ 20163045 (+) True sgta
XM_026926084.2 mRNA upstream 310533 20115488 ~ 20120596 (+) False zgc:113223
XM_026919781.2 mRNA downstream 116921 20548259 ~ 20563932 (+) True tmem259
XM_034308874.1 mRNA downstream 285193 20716531 ~ 20717902 (+) True sid1
XM_034308861.1 mRNA downstream 288093 20719431 ~ 20721806 (+) True si:ch211-1a19.2
XM_034308487.1 mRNA downstream 374993 20806331 ~ 20839589 (+) False mast3b
XM_034308489.1 mRNA downstream 374993 20806331 ~ 20839589 (+) False mast3b
TU218923 other upstream 280235 20149971 ~ 20150894 (+) True G184979
XR_003403385.2 other upstream 559666 19865798 ~ 19871463 (+) True ccl44
XR_004579107.1 other upstream 596715 19827986 ~ 19834414 (+) False tax1bp3
TU218602 other upstream 730855 19695244 ~ 19700274 (+) True rps15
TU218486 other upstream 877607 19550382 ~ 19553522 (+) False si:ch73-40i7.5
XR_004579103.1 other downstream 758448 21189786 ~ 21210539 (+) False wipf2a
trnap-agg_1 other downstream 1527550 21958888 ~ 21958959 (+) True trnap-agg_1
trnaq-uug_2 other downstream 3501528 23932866 ~ 23932937 (+) True trnaq-uug_2
trnaq-cug_11 other downstream 3502794 23934132 ~ 23934203 (+) True trnaq-cug_11
trnaq-uug_3 other downstream 3503297 23934635 ~ 23934706 (+) True trnaq-uug_3

Expression Profile