RNA id: TU219165


Basic Information

Item Value
RNA id TU219165
length 217
lncRNA type inter_gene
GC content 0.41
exon number 1
gene id G185182
representative True

Chromosome Information

Item Value
chromosome id NC_047605.1
NCBI id CM018551.1
chromosome length 26640196
location 20568076 ~ 20568292 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TGCACCCTTTTAGACCACTGTATGATAAAGGCATATCTAATCGACTgtaaactgtgctctgtgaaaacaCTAAGAGGAGCTACTACAGCATCTTTCTACAacacctgataaaacatcttaccGCACTGAAACAGTATCTTCAGTAACCAATGTGAGGGCAGCATGCatagtcattaaaaatgaggGCAAGGTGTTATGTTTTGGAGGCACACAATGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU219046 lncRNA upstream 12952 20554856 ~ 20555124 (+) True G185092
TU219010 lncRNA upstream 61396 20506477 ~ 20506680 (+) True G185063
TU218982 lncRNA upstream 131489 20435795 ~ 20436587 (+) True G185037
TU218987 lncRNA upstream 136738 20431129 ~ 20431338 (+) True G185042
XR_004579121.1 lncRNA upstream 273702 20267546 ~ 20294374 (+) False LOC117598445
TU219189 lncRNA downstream 137702 20705994 ~ 20708027 (+) True G185206
TU219346 lncRNA downstream 321955 20890247 ~ 20896461 (+) True G185330
TU219404 lncRNA downstream 396243 20964535 ~ 20967901 (+) True G185381
TU219446 lncRNA downstream 434536 21002828 ~ 21024560 (+) True G185418
TU219472 lncRNA downstream 490772 21059064 ~ 21060228 (+) True G185436
XM_026919781.2 mRNA upstream 4144 20548259 ~ 20563932 (+) True tmem259
XM_026922496.2 mRNA upstream 386834 20171890 ~ 20181242 (+) True slc1a8a
XM_026920083.2 mRNA upstream 397668 20163215 ~ 20170408 (+) True LOC113530255
XM_026920096.2 mRNA upstream 405031 20153984 ~ 20163045 (+) True sgta
XM_026926084.2 mRNA upstream 447480 20115488 ~ 20120596 (+) False zgc:113223
XM_034308874.1 mRNA downstream 148239 20716531 ~ 20717902 (+) True sid1
XM_034308861.1 mRNA downstream 151139 20719431 ~ 20721806 (+) True si:ch211-1a19.2
XM_034308487.1 mRNA downstream 238039 20806331 ~ 20839589 (+) False mast3b
XM_034308489.1 mRNA downstream 238039 20806331 ~ 20839589 (+) False mast3b
XM_034308490.1 mRNA downstream 238039 20806331 ~ 20839589 (+) False mast3b
TU218923 other upstream 417182 20149971 ~ 20150894 (+) True G184979
XR_003403385.2 other upstream 696613 19865798 ~ 19871463 (+) True ccl44
XR_004579107.1 other upstream 733662 19827986 ~ 19834414 (+) False tax1bp3
TU218602 other upstream 867802 19695244 ~ 19700274 (+) True rps15
TU218486 other upstream 1014554 19550382 ~ 19553522 (+) False si:ch73-40i7.5
XR_004579103.1 other downstream 621494 21189786 ~ 21210539 (+) False wipf2a
trnap-agg_1 other downstream 1390596 21958888 ~ 21958959 (+) True trnap-agg_1
trnaq-uug_2 other downstream 3364574 23932866 ~ 23932937 (+) True trnaq-uug_2
trnaq-cug_11 other downstream 3365840 23934132 ~ 23934203 (+) True trnaq-cug_11
trnaq-uug_3 other downstream 3366343 23934635 ~ 23934706 (+) True trnaq-uug_3

Expression Profile