RNA id: TU219189


Basic Information

Item Value
RNA id TU219189
length 1995
lncRNA type inter_gene
GC content 0.35
exon number 2
gene id G185206
representative True

Chromosome Information

Item Value
chromosome id NC_047605.1
NCBI id CM018551.1
chromosome length 26640196
location 20705994 ~ 20708027 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

gtgagtgtTTTAGAGCGCAAAACCAGTGTAATGGTAAACCTCTAAGTGATTTGTTTAGCATTGTCTAAAAGTTATTACTATACTTGAATCTCATTAGTTGTCTTAATCATGCCCTTCTTATAGGCTACTACTCAACAAGAGATGACTGCATATTCAAGTGGTTGCAAGGACAAACTCGAAGACTTAAAAtagtttagtttttaaaaatttattgcAACAGTATTTCCAATACACTCATACCTGCCAGTGCTCTCATTTTCTGTGATCACTTCCATATTTTTCCTTCTCATGGCATCCAAACCAAACAACAGTTACTAAGCCTTATCATGTGTGGGCTAATTTGAGCTACAGCCCAACTCACTTCTGGGAAGTGTCCGATTTTGACAgtactttatttgttttgttacagGAATAACTTAAAAGGAGGTTCCAATCTTCAGtatattttggcatattttgcAGGTGGAAAGAGGacaacattttaagtaaaatacCATCACTACATCAATACAATTACAAATGTGAATTAGACCTGTAGATCACCAAGCCACACACTGCTTGATGACAGTGTTGTTAGAATAAATCTCTTGCAGTTGGTGGCCAAATGTAAGCCAGGCCAAATATAGTCAGAGATATTCAGTACGCAGCCTAACAAATTCAGCACTTACACTTGCACTTTACTGGGGGCTCATGACGTGAAAAGTAGTTCAATTTGATCAAAATCACAGTCAGCCTAATTGttacctttttttctaagtgaTAAGTGTTCATGAGTTAGGCTTACGGTGGGTACATAGTAATCACATTCCAGCTCTTCATATTAAATGATGCCAGTGTTCATAAAGTTATGAGACTGTTTAAAGGAAATGGGTGAATCCACTTCGGTCAAACTCAAATGTGCGTCGTTTTTGTACGAgtaaatctgaatttaaaaaagaagctcTGGAGTGATATTTGCTTTAATGAATGGCACTATTTGTGCTATGTTTCCTGTCATGAATAGCTAGGTTTAGTTTCTTCTGCTGCAGACCACGCTGCAAGAAGACCAGTTTCAGAAAACTGCTTAAGTTTAGTCTAACCTTTGTTAGGTGGTGCCGAATGAGCAAATGAGTTTCACAGATTGGTCAATGAATTTAAAGAATCGTCATAGCATATAGGGTAATCCTTagagtaacattttttttgcaagataaagaagcaaacaaagATCAGAGAAAGACAATACAGGCTATGTTAGACATGTAACAGGCAAAAACATTGCTGCTGTTAAGTTTTGTTGACAGTGCAAACGCGACAGGCTTTAAGTCGAGATCAGACCAAATGACcaaaatgtgcatgtgtatcaTCTAAGGCCAGcccacaacttttttttttggtaaaatacATTAGTAATGCAACATTATTTTTTGCGTAAAGTCagaaattatcaaaataatagataataCAGTTTaagatgatatttttttttgtcctaatcCAGTAATCAATAAGAGATAAGCAGAAACACATCAGTCTAATGAAGTTCAAACAGTGGTAGCTGAGAGATATTTGAAATATGTTATATGCCAGAATATTTTAGCAGGTTTTAACTCCTCAGCTGTCAACAAAATCTATTTCTCACTTGGAGAGACACCTTTCTGATAATGTTCTCATAAATTAATAGCCAAAACTCCAgactatatttaaatttaaggagaaaaaaaaaaaggattaatgCTGAATGCTtatttgacttaaaaaaaaccattttgtttatatcactggaacaaaaaaacacatcttattATATTCCCCTAAAAGATAAATAACTCTTGCAGGAATATCCTTATTTTGTGACCTTAACATCCTGTTTGTTTTACAGCAGTGATTTTTCCATACAAAAGTAATGTGTGCTTCAAGTCCAGGTTAACTGCACACGTCATACTGGTGTCTTGACACAGTGTTGTACTGAAATATGTATCCAATTATCTTATTCAAACTCTCTCTTCAGCTCCG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU219165 lncRNA upstream 137702 20568076 ~ 20568292 (+) True G185182
TU219046 lncRNA upstream 150870 20554856 ~ 20555124 (+) True G185092
TU219010 lncRNA upstream 199314 20506477 ~ 20506680 (+) True G185063
TU218982 lncRNA upstream 269407 20435795 ~ 20436587 (+) True G185037
TU218987 lncRNA upstream 274656 20431129 ~ 20431338 (+) True G185042
TU219346 lncRNA downstream 182220 20890247 ~ 20896461 (+) True G185330
TU219404 lncRNA downstream 256508 20964535 ~ 20967901 (+) True G185381
TU219446 lncRNA downstream 294801 21002828 ~ 21024560 (+) True G185418
TU219472 lncRNA downstream 351037 21059064 ~ 21060228 (+) True G185436
TU219486 lncRNA downstream 369148 21077175 ~ 21084699 (+) False G185439
XM_026919781.2 mRNA upstream 142062 20548259 ~ 20563932 (+) True tmem259
XM_026922496.2 mRNA upstream 524752 20171890 ~ 20181242 (+) True slc1a8a
XM_026920083.2 mRNA upstream 535586 20163215 ~ 20170408 (+) True LOC113530255
XM_026920096.2 mRNA upstream 542949 20153984 ~ 20163045 (+) True sgta
XM_026926076.2 mRNA upstream 585637 20115488 ~ 20120357 (+) True zgc:113223
XM_034308874.1 mRNA downstream 8504 20716531 ~ 20717902 (+) True sid1
XM_034308861.1 mRNA downstream 11404 20719431 ~ 20721806 (+) True si:ch211-1a19.2
XM_034308487.1 mRNA downstream 98304 20806331 ~ 20839589 (+) False mast3b
XM_034308489.1 mRNA downstream 98304 20806331 ~ 20839589 (+) False mast3b
XM_034308490.1 mRNA downstream 98304 20806331 ~ 20839589 (+) False mast3b
TU218923 other upstream 555100 20149971 ~ 20150894 (+) True G184979
XR_003403385.2 other upstream 834531 19865798 ~ 19871463 (+) True ccl44
XR_004579107.1 other upstream 871580 19827986 ~ 19834414 (+) False tax1bp3
TU218602 other upstream 1005720 19695244 ~ 19700274 (+) True rps15
TU218486 other upstream 1152472 19550382 ~ 19553522 (+) False si:ch73-40i7.5
XR_004579103.1 other downstream 481759 21189786 ~ 21210539 (+) False wipf2a
trnap-agg_1 other downstream 1250861 21958888 ~ 21958959 (+) True trnap-agg_1
trnaq-uug_2 other downstream 3224839 23932866 ~ 23932937 (+) True trnaq-uug_2
trnaq-cug_11 other downstream 3226105 23934132 ~ 23934203 (+) True trnaq-cug_11
trnaq-uug_3 other downstream 3226608 23934635 ~ 23934706 (+) True trnaq-uug_3

Expression Profile