RNA id: TU219346


Basic Information

Item Value
RNA id TU219346
length 5836
lncRNA type inter_gene
GC content 0.44
exon number 4
gene id G185330
representative True

Chromosome Information

Item Value
chromosome id NC_047605.1
NCBI id CM018551.1
chromosome length 26640196
location 20890247 ~ 20896461 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GCTGGCATCCTACCAAAATAGTTGTTATATAAACTAACAAGGTTTTGCTATACAGGCAGCAGGAGAGGAACAAGATCAGGTCAACATGCCTACCATAGATTCTCAACACAAGAGCGCCACTTTGAGGACAAACGTAATGTGTTTGCTTATGTATTCACCCcttaaacatttccacattttgtactgtTAGAACCTGGAGCTGAAATGGAGTTGATcaccatttgatttacacaatagcTTAAGATTtgaaggtgattttttttttttatgtgacaaAAGCAGACATTTGCTAGTTGCATAAGCATTCACCTTCAAGGTCAACACCTGCTACAGCCACATTTGGCTCCAGgtcttctgggatatgtctATCAGCATTGCATATCTATAATCctgatgatatttttgcccattgTTAATGCAAAAGTCCTCACGTTCTGTCTAAAGACTActggtgaacagcaattttccaagtcttgccacagattcGCAGATTAATCAATTACTTACGCCATCACGGACATTTGGTGGACGGCTTTAATGATAGATTTAATGGTTCTCcaaaatttgaaatatttataaccAAACTCtaattgatacttttccagaactctGTCATGGACTTGTATTGCTTCTTAGGACCTAGTCTACATGATGTTTATTCAGGTATGTTCTCTGACAAACTCCGAGGCCTTCCAGGAACTTCCTCTGACAAACACTGTTCCGTTCAGGAAAaggtatatttatattgagatcatgtgacactaaCTGCACACAGGGACTCCATACAtcccccatccatccattttccttACCGCTCATCCTAGACAGTTTTGCGTGagaacctggagcctatcccaggggtcttggggcacaaggcaggggacaccctggacagggcaccaacccatcgcagggcacaattacacacactatGGGCAATTTGGAAAAGCCAATCAGCCTAGGGgagactaggggaggaaaccccttaagcacagagagaacatgcaagctctgcacacatagggcagaggcgggattcgaacctATAGCCCTACAGGTGTGAGGAAACCATGCCCCTAGGTGGATTCCATTAAACTAATTAtatgacttctgatggcaaatGCACCacaactaatttaggggtttcacagcaacaggcatgaatacttatgcagttACAAAAACTGAAATttctgcatttttctttacagcCAGTCAGTATATATTATTCTCTTAATTTCAGATCTCACATAAGGTCTGACTATCAGTGTTTGTCAATACCACACTTGCACTAACATGATCAGTGCATTCCTACCTGTAAGAATCATTGCAGACAGTGGCCCAATGATCCAACACTTAGTTCAAAGCCCATTTCCAGGTAAGAAAAGAAACTGGACAGTCCACGGTaagacagatttatttccatCTTTGTTATtggaaacattaaatataacttcaGAATGACTGACAATACAGGTACAATTGTTGAATGTGACTTTACAAATCAAGTGCTCCTCTCATTCCACTGCAACTTTTTAAATCCTGCccaaaatacttttttttacgAATGTTCTTCAGCCAGTTTCTCTGCCTTCTGGACAACCTCCTCGATGGGACCCACCATGTAGAACGCCTGCTCAGGCAATGCATCATACTCTCCTGTTCAAGATAAAAAGTGCTTCAGTAAGATTGCACTAGAGGCCCATTATATTCAATTGGCTCATGTTACCTGTTGAAACAAAATAGAACTGTGGGGGGGTGAATGCAAACCTCCAAGAATGCTCTTGAATCCTTTGATGGTATCCTTAAGGGGCACCAGCTTGCCCAAGTGTCCAGTGAAGACCTCAGCCACCTGGAAGGGCTGGGACAGGAATCTCTGGATCTTACGGGCACGAGCTACAGTCAGCTTATCCTCCTCAGACAACTCATCCATACCCAGGATGGCAATAATATCCTGCAGAGACTTGTAGTCCTGCAAAGATATGCACAATCACTTATGTGAAAGTGACCATTACATTATTAGGATTAAGTTGAAGGAAGTGGATTCAACAGAAAACCACTGAAAACTTCTTAACCAGCAAAGACATTCAAGTGGCCTCGAGTTGTACTACATGCCACATACCTGAAGGATCTTCTGTACACCACGGGCCACTTCATAGTGCTCAGTTCCCACAATGTTGGGGTCCATGATACGGGAGGTGGAATCCAGAGGGTCTACAGCAGGGTAGATACCCAGCTCAGCAATGGCACGGGACAACACAGTGGTGGCATCCAAGTGGGCAAAGGTGGTGGCAGGGGCAGGATCAGTCAAGTCATCAGCAGGCACATAGATGGCCTGAAGAACATCAAGAATAggttcaaatcaaatcaaaagttattaaaaacaaagtaaacaagAAGTAAAAGGGTAAACAAATCACTTAAATCCAGGTACGAACCTGTACAGATGTGATTGAGCCTTTCTTTGTGGTGGTGATTCTCTCTTGCATGGTACCCATGTCAGTAGCCAGGGTTGGCTGATAACCCACAGCAGAGGGAATACGACCCAGCAAGGCAGACACCTGGAGAAGAACGAGATGTGAATTTGGCTGCCAACATTGCACATTATGAAGAATCAGACATTCATCTGTAATTACCTCTGATCCAGCCTGGGTGAAGCGGAAGATGTTGTCGATGAAAAGCAGCACATCCTGTCCCTCCTGATCACGGAAATATTCAGCAACGGTAAGACCAGTCAGAGCCACACGGGCACGGGCGCCTGGGGGCTCATTCATCTGTCCGTACACCAGCGCGACCTGGAGGTGGTATCCTTCAGGTTGATGACACCAGACTCAATCATCTCATGGTACAGATCGTTTCCTTCACGGGTCCTTTCCCCGACACCAGCAAACACGGAATAACCACCATGGGCTTTGGCCACATTGTTGATCAGCTCCATAATTAACACAGTCTTTCCTACACCAGCACCACCGAACAGACCTGCACAAtgttgaaaaggaaaaaaaaaaaaaaaccacatttgTTGATTCAGATTTTAGGTCAAAATTCATAAATCAGAAATCAGTCAAATGCACACAATCTCAGCTTACAAATGTTAAAATCAGCAGTTTATATAAAACATGGAATAAATGGCTTGCtgctattttttaataaactacCAAGCTATAGATCACATCTCTTGACAAACGCCTCCTTGAAGTAACTAGTTGCAGGAAAAACCTGTGAATGCATTGTGGGTGCTAGAAGTTCTGAAGGAGTCTGAATCATACCGATCTTTCCACCCTTGGCGTAGGGGGCCAGAAGGTCGACCACCTTGATTCCTGTGACCAGAATCTCCTGCTCCACACTCATGTCAGTAAACTCTGGGGCCTCAGCATGGATGGCAGCAGTCCTTTTTTGTGGTGATTGGTCCTCGCTCATCAATGGGCTCGCCAATGACGTTCATGATCCTGCCCAGTGTCTCAGGTCCCACAGGGATTCTGATAGGGGCACCAGTATCCAAAACCTTCTGGCCACGCACCAGGCCCTCAGTACCGTCCATAGCGATGGTACGTACAGTGTTCTCCcctgttgggaaaaaaaaaaatgaataaataaataatacacataacCAAATCTCTAACTTTCTATTTAAAACTGTGTTGAACATTTGCAAACATCATTCCCTATCCTAATCCTGCCACCCCAAGGCACAGAAGATCCCACTCCATCTTTATTAACTGAAGTGATTATGACCAATTTGTCTCCTTCACCTAACTATACATAACTAGTACACTGAAATCCTAATGCCACTAAGTACTTACTCCAgtaaatgtttgctttgttaACAGCATTCTATTGGACAGCGAACTACTTGGGCTGAAGAATGGCATTACATTATTCCCCATGTACATAACAGGGTTCGGGATTTTGCCCACCTGTTGGCAGGGCTTAACTGCAACCACTGGACTCACTAGTGGGTTCAGACTGTCATAACTACATACCCATCTTACTAGAGTCACTGTATGTAGTGAATGCTTTAAGATGAACAGAATATTGGCTTTtaggggacaaaaaaaaaaaaaaaaagtccttggTGAAAACAACAGCTAAAAGTCTTAAATACTTCAAATAACCTCATAATAGAAAACATTCAGTTGTGCAACAACTAAATGTAAGCAATTCATTTTGTGTTGCACGAGTGTAAAATTTATTTGCTTTAAGAACATAACCGTCACTAATCTGGTCAAACAAACCCTTATATTAGAAATAATCTTTAGAGTCTGTATTTGCATAAACCTCATTCACTGCATCTCAGTcactggctacgtttacatgcacatcaacttccgtttaaggtctatattcaggttgcagccatattccaaatacgatgtttatatgcgtacaggcatcagaatattcccGTATACATGGCTGTTGTAAGTATACCGGAGTTGCCATTTCTacatacctagcctacagctaagcatctgttagcacccacaattccttgtggactgaACCTTacgcatatatctcctttcaatggattttctgaataaggtgtttacatgcaacaaactTTCTATTAAAACATGCATATTCCAGGttgggaatcggaatttggggaatctgaatattgtcttaatctgaatcaggcaatCTGATtcatatcagaatattgatgtgcatgtaaatgtagccactGAGGTTCAACTTTATCCTGAATAATGTGTGTCCATATGGTGCTGCACTAATACACGTTATAATCTAATCCTGATAACTCGTCAGTGCAGCCCGATCTCTCAACACTGCTGGTGAAGTGGACTCTCTGGAGCATTTACCCAGGTGCTGAGCCACCTCCAAGACGAGCCTGGTGTCACGACCGGCCACCTCCAGGGCGTTGAGGATCGGCGGCAGACCTTCGTCGAACTGCACGTCCACGACGGCGCCGATGACCGCCACGATACGACCGctggcggcggcggcggcagcAGCGGGAGCGACATAATCCCtgcctggagagagagagagaaaacacagagaatCAATGAAAAACATTCACTCATCATGACTTCCTGTATCAGGTATGAAAGTAGACAAGCTAACTTTTCAGTGTTGCTCGAGATGCAAAAGTTAAGACGTTTTCTTTTCGTAAAACTTCTATGACGCGTCTTCAGTCGTGCGTTTTCTGCAGCTCGAGGTCAAAACATTAGCTACAGCAGCTAGCTAGCCTCTGCTGCCGGTTAGCACACTACACAGGAAAGCTAGCTGGCTAGGGGTGGGTGTACTACACTGACGGCAAATAAACACCCATATAAACcttaagttttaaaaataataacgataaatgaataaataaacaaataaacgcACTGTTCTTTAGTCCATGATGCTACCTTGACACGTTAGCATCTAGTTAGCTACCTTGCTAAGTGAGCTTAGCCTTCATGTCACTTCCACCATGACACATAAAGGTCATTCCGGTTTTAGGGCAATCACCATTACTGCTACTTTCCAGTTAGTTTCGTGATAAGAAGACGCGTCATTCTCGCCAAATTAAACCTGCACACACTGGTGAATATTAAACGAAATCTAACAGAAGACGGCAGGGAGTGAAAGTCTGCGGCCTGCCCGCATGCTGCCGGCCTCGTCATGGCGGCGTCACTGATTTCAGAAAAACTGTAAAGTAGCACAAAACTCTCAAAACAGAAATCAAATGGGTGCGTAACTTACGAGAAAACAGCGCCGCTGGAGCTCCGGTGAAAGCCTTCAGGGGGGTAACCCCGGGCTTGAGAGCCTGCAAAGCCCCCGTGCAGCAGCGTCCCACAGCTCCCAACATCTTCAAAATGGC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU219189 lncRNA upstream 182220 20705994 ~ 20708027 (+) True G185206
TU219165 lncRNA upstream 321955 20568076 ~ 20568292 (+) True G185182
TU219046 lncRNA upstream 335123 20554856 ~ 20555124 (+) True G185092
TU219010 lncRNA upstream 383567 20506477 ~ 20506680 (+) True G185063
TU218982 lncRNA upstream 453660 20435795 ~ 20436587 (+) True G185037
TU219404 lncRNA downstream 68074 20964535 ~ 20967901 (+) True G185381
TU219446 lncRNA downstream 106367 21002828 ~ 21024560 (+) True G185418
TU219472 lncRNA downstream 162603 21059064 ~ 21060228 (+) True G185436
TU219486 lncRNA downstream 180714 21077175 ~ 21084699 (+) False G185439
TU219480 lncRNA downstream 182211 21078672 ~ 21084699 (+) False G185439
XM_026920038.2 mRNA upstream 2903 20881535 ~ 20887344 (+) True LOC113530200
XM_026920046.2 mRNA upstream 2903 20882591 ~ 20887344 (+) False LOC113530200
XM_034308487.1 mRNA upstream 50658 20806331 ~ 20839589 (+) False mast3b
XM_034308489.1 mRNA upstream 50658 20806331 ~ 20839589 (+) False mast3b
XM_034308490.1 mRNA upstream 50658 20806331 ~ 20839589 (+) False mast3b
XM_026912456.2 mRNA downstream 36281 20932742 ~ 20947791 (+) False elovl1b
XM_026912465.2 mRNA downstream 36751 20933212 ~ 20947791 (+) True elovl1b
XM_026912474.2 mRNA downstream 38528 20934989 ~ 20947791 (+) False elovl1b
XM_026920807.2 mRNA downstream 72274 20968735 ~ 20989421 (+) True chrna4b
XM_026920815.2 mRNA downstream 86571 20983032 ~ 20989421 (+) False chrna4b
TU218923 other upstream 739353 20149971 ~ 20150894 (+) True G184979
XR_003403385.2 other upstream 1018784 19865798 ~ 19871463 (+) True ccl44
XR_004579107.1 other upstream 1055833 19827986 ~ 19834414 (+) False tax1bp3
TU218602 other upstream 1189973 19695244 ~ 19700274 (+) True rps15
TU218486 other upstream 1336725 19550382 ~ 19553522 (+) False si:ch73-40i7.5
XR_004579103.1 other downstream 293325 21189786 ~ 21210539 (+) False wipf2a
trnap-agg_1 other downstream 1062427 21958888 ~ 21958959 (+) True trnap-agg_1
trnaq-uug_2 other downstream 3036405 23932866 ~ 23932937 (+) True trnaq-uug_2
trnaq-cug_11 other downstream 3037671 23934132 ~ 23934203 (+) True trnaq-cug_11
trnaq-uug_3 other downstream 3038174 23934635 ~ 23934706 (+) True trnaq-uug_3

Expression Profile