RNA id: TU219472


Basic Information

Item Value
RNA id TU219472
length 473
lncRNA type inter_gene
GC content 0.49
exon number 3
gene id G185436
representative True

Chromosome Information

Item Value
chromosome id NC_047605.1
NCBI id CM018551.1
chromosome length 26640196
location 21059064 ~ 21060228 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GCACTGAGCAGGTTTCCACTCAGGTTGGGGTTCCAGGAAAGACCATAGCCCTCCTTCTGATGCCCTCTGAGTCTCAGGTCTGGACTGCACTCACCGCTGGGGTCTACTGGTTTGGATGGGTGTTTAGTGTAGTCAAAGACTAGCACATCAGATGTAGGAGTCTTCGTGGCGATTATGCAGGGGTTCTGTGGCATGTACCTCGCCCGGTTCACCTCACCCTCATGATTGATCTTTATCTCGATCTCAATCTTTCCGCTCACAGACCCAAAGCCTCCAAActctCCTCCTTTTTCACTGTCGTAGTGAGAAGCATCAAACTGAGCGTCGTCGTTGGGGATCTGAACACTGGCAATGACCAGATGGTTCTGCTCatctgaagtgtgtgttccCAGCACCAGTCTGTGAATTGCATAATCCTTTCCCTCCGGTCTAAACCAGAAATTAAACATGGATAAGGTTCTCAGAGATTTTAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU219446 lncRNA upstream 34504 21002828 ~ 21024560 (+) True G185418
TU219404 lncRNA upstream 91163 20964535 ~ 20967901 (+) True G185381
TU219346 lncRNA upstream 162603 20890247 ~ 20896461 (+) True G185330
TU219189 lncRNA upstream 351037 20705994 ~ 20708027 (+) True G185206
TU219165 lncRNA upstream 490772 20568076 ~ 20568292 (+) True G185182
TU219486 lncRNA downstream 16947 21077175 ~ 21084699 (+) False G185439
TU219480 lncRNA downstream 18444 21078672 ~ 21084699 (+) False G185439
TU219481 lncRNA downstream 18444 21078672 ~ 21084699 (+) False G185439
TU219482 lncRNA downstream 18444 21078672 ~ 21339714 (+) False G185439
TU219491 lncRNA downstream 18444 21078672 ~ 21084699 (+) False G185439
XM_026915666.2 mRNA upstream 8591 21043300 ~ 21050473 (+) False txlng
XM_026915674.2 mRNA upstream 8591 21043461 ~ 21050473 (+) False txlng
XM_034308444.1 mRNA upstream 8591 21044005 ~ 21050473 (+) True txlng
XM_026927592.2 mRNA upstream 22490 21029394 ~ 21036574 (+) False hcn5
XM_026927583.2 mRNA upstream 22490 21030258 ~ 21036574 (+) True hcn5
XM_026930272.2 mRNA downstream 3189 21063417 ~ 21070097 (+) True zrsr2
XM_034308440.1 mRNA downstream 3288 21063516 ~ 21070097 (+) False zrsr2
XM_034308442.1 mRNA downstream 3288 21063516 ~ 21070097 (+) False zrsr2
XM_034308441.1 mRNA downstream 3288 21063516 ~ 21070097 (+) False zrsr2
XM_034308443.1 mRNA downstream 3288 21063516 ~ 21070097 (+) False zrsr2
TU218923 other upstream 908170 20149971 ~ 20150894 (+) True G184979
XR_003403385.2 other upstream 1187601 19865798 ~ 19871463 (+) True ccl44
XR_004579107.1 other upstream 1224650 19827986 ~ 19834414 (+) False tax1bp3
TU218602 other upstream 1358790 19695244 ~ 19700274 (+) True rps15
TU218486 other upstream 1505542 19550382 ~ 19553522 (+) False si:ch73-40i7.5
XR_004579103.1 other downstream 129558 21189786 ~ 21210539 (+) False wipf2a
trnap-agg_1 other downstream 898660 21958888 ~ 21958959 (+) True trnap-agg_1
trnaq-uug_2 other downstream 2872638 23932866 ~ 23932937 (+) True trnaq-uug_2
trnaq-cug_11 other downstream 2873904 23934132 ~ 23934203 (+) True trnaq-cug_11
trnaq-uug_3 other downstream 2874407 23934635 ~ 23934706 (+) True trnaq-uug_3

Expression Profile