RNA id: TU219485


Basic Information

Item Value
RNA id TU219485
length 815
lncRNA type inter_gene
GC content 0.62
exon number 4
gene id G185439
representative False

Chromosome Information

Item Value
chromosome id NC_047605.1
NCBI id CM018551.1
chromosome length 26640196
location 21077175 ~ 21339714 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

aagCTGCTGCTTGAGGGGTGAGTGTAAAAGACTGAGTCCCGCTGTATTGCTCAGGCTGCACTGCAGTGTCTATTCACAGGCGCGATCCCACTACTGATCGGCACGGGGGCTTTGACCTGCTCCGTTCCCGACCTGGGCCGGTTCACCCCTCCTTAGGCGACCTGGTGGTCCCGAGCTCCCTCCGGAGCACCATATCGATACCGAACTTAGTGCGGACACCCGATCGGCATAGGCCACTACTGATCGGCACGGGGGCTTTGACCTGCTCCGTTCCCGCTGTATTGCTCAGGCTGCACTGCAGTGTCTATTCACAGGCGCGATCCCACTACTGATCGGCACGGGGGCTTTGACCTGCTCCGTTCCCGACCTGGGCCGGTTCACCCCTCCTTAGGCGACCTGGTGGTCCCGAGCTCCCTCCGGAGCACCATATCGATACCGAACTTAGTGCGGACACCCGATCGGCATAGGCCACTGCAGCCCAGAACCCCTGAGCTCAAACGATCCGCCAGCCTCAGCCTCCCGTCCCGCTGTATTGCTCAGGCTGCACTGCAGTGTCTATTCACAGGCGCGATCCCACTACTGATCGGCACGGGGGCTTTGACCTGCTCCGTTCCCGACCTGGGCCGGTTCACCCCTCCTTAGGCGACCTGGTGGTCCCGAGCTCCCTCCGGAGCACCATATCGATACCGAACTTAGTGCGGACACCCGATCGGCATAGGCCACTGCAGCCCAGAACCCCTGAGCTCAAACGATCCGCCAGCCTCAGCCTCCCGGTAGCTTGGATTACAGGCACGCGCCACCGCGCCCGGCGAGAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU219537 lncRNA upstream 65261 21261575 ~ 21262176 (+) False si:dkey-28e7.3
XR_003402980.2 lncRNA upstream 79307 21237304 ~ 21248130 (+) True LOC113528706
TU219486 lncRNA upstream 242738 21077175 ~ 21084699 (+) False G185439
TU219480 lncRNA upstream 242738 21078672 ~ 21084699 (+) False G185439
TU219481 lncRNA upstream 242738 21078672 ~ 21084699 (+) False G185439
TU219567 lncRNA downstream 50637 21390351 ~ 21390568 (+) True G185500
TU219568 lncRNA downstream 51130 21390844 ~ 21391810 (+) True G185501
TU219569 lncRNA downstream 55648 21395362 ~ 21404052 (+) True G185502
TU219570 lncRNA downstream 67765 21407479 ~ 21409792 (+) True G185503
TU219589 lncRNA downstream 104670 21444384 ~ 21446480 (+) True G185519
XM_026916820.2 mRNA upstream 3168 21321091 ~ 21324269 (+) True krt94
XM_026921674.2 mRNA upstream 34520 21290434 ~ 21292917 (+) True krt15
XM_026936635.2 mRNA upstream 49485 21270459 ~ 21277952 (+) True krt99
XM_026917326.2 mRNA upstream 62382 21252145 ~ 21265055 (+) True si:dkey-28e7.3
XM_026912525.2 mRNA upstream 121198 21200218 ~ 21206239 (+) True cdc6
XM_026935643.2 mRNA downstream 229 21339943 ~ 21344414 (+) True c11h6orf120
XM_026930037.2 mRNA downstream 6503 21346217 ~ 21351331 (+) True mrpl4
XM_034308958.1 mRNA downstream 6503 21346217 ~ 21350373 (+) False mrpl4
XM_026922435.2 mRNA downstream 19760 21359474 ~ 21373371 (+) True col9a1a
XM_034308765.1 mRNA downstream 44159 21383873 ~ 21390206 (+) True lgsn
XR_004579103.1 other upstream 116898 21189786 ~ 21210539 (+) False wipf2a
TU218923 other upstream 1176543 20149971 ~ 20150894 (+) True G184979
XR_003403385.2 other upstream 1455974 19865798 ~ 19871463 (+) True ccl44
XR_004579107.1 other upstream 1493023 19827986 ~ 19834414 (+) False tax1bp3
TU218602 other upstream 1627163 19695244 ~ 19700274 (+) True rps15
trnap-agg_1 other downstream 619174 21958888 ~ 21958959 (+) True trnap-agg_1
trnaq-uug_2 other downstream 2593152 23932866 ~ 23932937 (+) True trnaq-uug_2
trnaq-cug_11 other downstream 2594418 23934132 ~ 23934203 (+) True trnaq-cug_11
trnaq-uug_3 other downstream 2594921 23934635 ~ 23934706 (+) True trnaq-uug_3
trnaq-uug_4 other downstream 2597303 23937017 ~ 23937088 (+) True trnaq-uug_4

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
rainbow trout (Oncorhynchus mykiss) TU399446 False 587 lncRNA 0.60 2 NC_048568.1 41590389 ~ 41682780 (-)