Gene
RNA
| Item | Value |
|---|---|
| RNA id | TU219490 |
| length | 1066 |
| lncRNA type | inter_gene |
| GC content | 0.61 |
| exon number | 4 |
| gene id | G185439 |
| representative | False |
| Item | Value |
|---|---|
| chromosome id | NC_047605.1 |
| NCBI id | CM018551.1 |
| chromosome length | 26640196 |
| location | 21077175 ~ 21339714 (+) |
| genome version | GENO_Phyp_1.0_2019_striped_catfish_Genome |
| species | striped catfish (Pangasianodon hypophthalmus) |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU219537 | lncRNA | upstream | 65078 | 21261575 ~ 21262176 (+) | False | si:dkey-28e7.3 |
| XR_003402980.2 | lncRNA | upstream | 79124 | 21237304 ~ 21248130 (+) | True | LOC113528706 |
| TU219486 | lncRNA | upstream | 242555 | 21077175 ~ 21084699 (+) | False | G185439 |
| TU219480 | lncRNA | upstream | 242555 | 21078672 ~ 21084699 (+) | False | G185439 |
| TU219481 | lncRNA | upstream | 242555 | 21078672 ~ 21084699 (+) | False | G185439 |
| TU219567 | lncRNA | downstream | 50637 | 21390351 ~ 21390568 (+) | True | G185500 |
| TU219568 | lncRNA | downstream | 51130 | 21390844 ~ 21391810 (+) | True | G185501 |
| TU219569 | lncRNA | downstream | 55648 | 21395362 ~ 21404052 (+) | True | G185502 |
| TU219570 | lncRNA | downstream | 67765 | 21407479 ~ 21409792 (+) | True | G185503 |
| TU219589 | lncRNA | downstream | 104670 | 21444384 ~ 21446480 (+) | True | G185519 |
| XM_026916820.2 | mRNA | upstream | 2985 | 21321091 ~ 21324269 (+) | True | krt94 |
| XM_026921674.2 | mRNA | upstream | 34337 | 21290434 ~ 21292917 (+) | True | krt15 |
| XM_026936635.2 | mRNA | upstream | 49302 | 21270459 ~ 21277952 (+) | True | krt99 |
| XM_026917326.2 | mRNA | upstream | 62199 | 21252145 ~ 21265055 (+) | True | si:dkey-28e7.3 |
| XM_026912525.2 | mRNA | upstream | 121015 | 21200218 ~ 21206239 (+) | True | cdc6 |
| XM_026935643.2 | mRNA | downstream | 229 | 21339943 ~ 21344414 (+) | True | c11h6orf120 |
| XM_026930037.2 | mRNA | downstream | 6503 | 21346217 ~ 21351331 (+) | True | mrpl4 |
| XM_034308958.1 | mRNA | downstream | 6503 | 21346217 ~ 21350373 (+) | False | mrpl4 |
| XM_026922435.2 | mRNA | downstream | 19760 | 21359474 ~ 21373371 (+) | True | col9a1a |
| XM_034308765.1 | mRNA | downstream | 44159 | 21383873 ~ 21390206 (+) | True | lgsn |
| XR_004579103.1 | other | upstream | 116715 | 21189786 ~ 21210539 (+) | False | wipf2a |
| TU218923 | other | upstream | 1176360 | 20149971 ~ 20150894 (+) | True | G184979 |
| XR_003403385.2 | other | upstream | 1455791 | 19865798 ~ 19871463 (+) | True | ccl44 |
| XR_004579107.1 | other | upstream | 1492840 | 19827986 ~ 19834414 (+) | False | tax1bp3 |
| TU218602 | other | upstream | 1626980 | 19695244 ~ 19700274 (+) | True | rps15 |
| trnap-agg_1 | other | downstream | 619174 | 21958888 ~ 21958959 (+) | True | trnap-agg_1 |
| trnaq-uug_2 | other | downstream | 2593152 | 23932866 ~ 23932937 (+) | True | trnaq-uug_2 |
| trnaq-cug_11 | other | downstream | 2594418 | 23934132 ~ 23934203 (+) | True | trnaq-cug_11 |
| trnaq-uug_3 | other | downstream | 2594921 | 23934635 ~ 23934706 (+) | True | trnaq-uug_3 |
| trnaq-uug_4 | other | downstream | 2597303 | 23937017 ~ 23937088 (+) | True | trnaq-uug_4 |
