RNA id: TU219491


Basic Information

Item Value
RNA id TU219491
length 723
lncRNA type inter_gene
GC content 0.60
exon number 2
gene id G185439
representative False

Chromosome Information

Item Value
chromosome id NC_047605.1
NCBI id CM018551.1
chromosome length 26640196
location 21077175 ~ 21339714 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CCGCTCTGCACTGCTCTCGCCGGGCGCGGTGGCGCGTGCCTGTAATCCAAGCTACCGGGAGGCTGAGGCTGGCGGATCGTTTGAGCTCAGGGGTTCTGGGCTGCAGTGGCCTATGCCGATCGGGTGTCCGCACTAAGTTCGGTATCGATATGGTGCTCCGGAGGGAGCTCGGGACCACCAGGTCGCCTAAGGAGGGGTGAACCGGCCCAGGTCGGGAACGGAGCAGGGCCGGGCGCGGTGGCGCGTGCCTGTAATCCAAGCTACCGGGAGGCTGAGGCTGGCGGATCGTTTGAGCTCAGGGGTTCTGGGCTGCAGTGGCCTATGCCGATCGGGTGTCCGCACTAAGTTCGGTATCGATATGGTGCTCCGGAGGGAGCTCGGGACCACCAGGTCGCCTAAGGAGGGGTGAACCGGCCCAGGTCGGGAACGGAGCAGGTCAAAGCCCCCGTGCCGATCAGTAGTGGGATCGCGCCTGTGAATAGACACTGCAGTGCAGCCTGAGCAATACAGCGGGACTCAGTCTTTTACACTCACCCCTCAAGCAGCAGcttctacacacacagcagcaccacAACATACTGTCCTCTCACAACGCACTGCTTCACTCACTGCTCCTAAATGCACCAGTGTTACACTCAACAGCACACCTACACCTCAACCTCATCAACACGCTTTACCTTCACTCACCATAAACATCACCCCACAATCACCCCCAAACATCTC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU219472 lncRNA upstream 18444 21059064 ~ 21060228 (+) True G185436
TU219446 lncRNA upstream 54112 21002828 ~ 21024560 (+) True G185418
TU219404 lncRNA upstream 110771 20964535 ~ 20967901 (+) True G185381
TU219346 lncRNA upstream 182211 20890247 ~ 20896461 (+) True G185330
TU219189 lncRNA upstream 370645 20705994 ~ 20708027 (+) True G185206
XR_003402980.2 lncRNA downstream 152605 21237304 ~ 21248130 (+) True LOC113528706
TU219537 lncRNA downstream 176876 21261575 ~ 21262176 (+) False si:dkey-28e7.3
TU219490 lncRNA downstream 242555 21327254 ~ 21339714 (+) False G185439
TU219483 lncRNA downstream 242738 21327437 ~ 21339714 (+) False G185439
TU219484 lncRNA downstream 242738 21327437 ~ 21339714 (+) False G185439
XM_026930272.2 mRNA upstream 8575 21063417 ~ 21070097 (+) True zrsr2
XM_034308716.1 mRNA downstream 2218 21086917 ~ 21105876 (+) True npepps
XM_026940939.2 mRNA downstream 23894 21108593 ~ 21114493 (+) True mrpl45
XM_026926035.2 mRNA downstream 46780 21131479 ~ 21141847 (+) True socs7
XM_026926043.2 mRNA downstream 46781 21131480 ~ 21141847 (+) False socs7
XM_026921935.2 mRNA downstream 58372 21143071 ~ 21153622 (+) False sp2
TU218923 other upstream 927778 20149971 ~ 20150894 (+) True G184979
XR_003403385.2 other upstream 1207209 19865798 ~ 19871463 (+) True ccl44
XR_004579107.1 other upstream 1244258 19827986 ~ 19834414 (+) False tax1bp3
TU218602 other upstream 1378398 19695244 ~ 19700274 (+) True rps15
TU218486 other upstream 1525150 19550382 ~ 19553522 (+) False si:ch73-40i7.5
XR_004579103.1 other downstream 105087 21189786 ~ 21210539 (+) False wipf2a
trnap-agg_1 other downstream 874189 21958888 ~ 21958959 (+) True trnap-agg_1
trnaq-uug_2 other downstream 2848167 23932866 ~ 23932937 (+) True trnaq-uug_2
trnaq-cug_11 other downstream 2849433 23934132 ~ 23934203 (+) True trnaq-cug_11
trnaq-uug_3 other downstream 2849936 23934635 ~ 23934706 (+) True trnaq-uug_3

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) TU493407 False 522 lncRNA 0.61 2 CI01000305 30965 ~ 36781 (+)
rainbow trout (Oncorhynchus mykiss) TU759797 False 515 lncRNA 0.63 2 NC_048572.1 4580283 ~ 4677334 (-)