RNA id: TU219567


Basic Information

Item Value
RNA id TU219567
length 218
lncRNA type inter_gene
GC content 0.30
exon number 1
gene id G185500
representative True

Chromosome Information

Item Value
chromosome id NC_047605.1
NCBI id CM018551.1
chromosome length 26640196
location 21390351 ~ 21390568 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

ATTTTATgaaagtatttattttctttgaacCCTTGACCCAGGCTACACTACTCAACGGGATGttacaaataaatgtttttactttcacatATAAAGATGGGTTTACTATGTATGTCTTGAGCTGTTTTCATCCTGCATATTTTCATCTGTTATGCATTATAGGACAACCTTCTAAATATTTTACCCTTTTTAATCTGAAAccataagacaaaaatatg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU219482 lncRNA upstream 50637 21078672 ~ 21339714 (+) False G185439
TU219492 lncRNA upstream 50637 21078672 ~ 21339714 (+) True G185439
TU219490 lncRNA upstream 50637 21327254 ~ 21339714 (+) False G185439
TU219483 lncRNA upstream 50637 21327437 ~ 21339714 (+) False G185439
TU219484 lncRNA upstream 50637 21327437 ~ 21339714 (+) False G185439
TU219568 lncRNA downstream 276 21390844 ~ 21391810 (+) True G185501
TU219569 lncRNA downstream 4794 21395362 ~ 21404052 (+) True G185502
TU219570 lncRNA downstream 16911 21407479 ~ 21409792 (+) True G185503
TU219589 lncRNA downstream 53816 21444384 ~ 21446480 (+) True G185519
TU219609 lncRNA downstream 75764 21466332 ~ 21466938 (+) True G185533
XM_034308765.1 mRNA upstream 145 21383873 ~ 21390206 (+) True lgsn
XM_026914590.2 mRNA upstream 145 21383874 ~ 21390206 (+) False lgsn
XM_034308764.1 mRNA upstream 145 21386972 ~ 21390206 (+) False lgsn
XM_026922435.2 mRNA upstream 16980 21359474 ~ 21373371 (+) True col9a1a
XM_026930037.2 mRNA upstream 39020 21346217 ~ 21351331 (+) True mrpl4
XM_034308416.1 mRNA downstream 142113 21532681 ~ 21552267 (+) True psmd14
XM_026914564.2 mRNA downstream 164133 21554701 ~ 21559002 (+) True tbr1a
XM_026918527.2 mRNA downstream 170487 21561055 ~ 21605914 (+) False slc4a10a
XM_026918518.2 mRNA downstream 170489 21561057 ~ 21605913 (+) False slc4a10a
XM_026918535.2 mRNA downstream 170489 21561057 ~ 21605913 (+) False slc4a10a
XR_004579103.1 other upstream 179812 21189786 ~ 21210539 (+) False wipf2a
TU218923 other upstream 1239457 20149971 ~ 20150894 (+) True G184979
XR_003403385.2 other upstream 1518888 19865798 ~ 19871463 (+) True ccl44
XR_004579107.1 other upstream 1555937 19827986 ~ 19834414 (+) False tax1bp3
TU218602 other upstream 1690077 19695244 ~ 19700274 (+) True rps15
trnap-agg_1 other downstream 568320 21958888 ~ 21958959 (+) True trnap-agg_1
trnaq-uug_2 other downstream 2542298 23932866 ~ 23932937 (+) True trnaq-uug_2
trnaq-cug_11 other downstream 2543564 23934132 ~ 23934203 (+) True trnaq-cug_11
trnaq-uug_3 other downstream 2544067 23934635 ~ 23934706 (+) True trnaq-uug_3
trnaq-uug_4 other downstream 2546449 23937017 ~ 23937088 (+) True trnaq-uug_4

Expression Profile