RNA id: TU219589


Basic Information

Item Value
RNA id TU219589
length 2072
lncRNA type inter_gene
GC content 0.38
exon number 2
gene id G185519
representative True

Chromosome Information

Item Value
chromosome id NC_047605.1
NCBI id CM018551.1
chromosome length 26640196
location 21444384 ~ 21446480 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

AGCACATTTCCTTTATTTCAACTTACTGGGAATCAAAACTGCattgtaaggaaaaaaaattacatatgcTGTCAAGGAGTTGGATCTCACAGCTAAAAACTGAATGTACAAGCTTCCTCTGTCACACAAGTCGTTcaacaaataaaagcatattaaaaacaaataaaagtacATGAAGAATAAGAACAAATAAAAGTACATGAGGAATAAGAGGGAAGGGCCCTTGTGGAAGCTTCATACAGCTGTTCAAAACTATTTTTTACTtcattacaaacaaaacaaacatgacagTAAAACTGTAAACCATGATTCAATACTGTACAGCTATTTTATCCCATGTGGcacaaaaaaagtcacatcACATCAAGCAGAAAAGGAATATCAACCCCGTTAACCCTTTCAATGAGCACAGTGCATATACAAAGTGGAAGCATGAATGTCTTGTGATCTATTCCAAGGCTGGCTTCTAGAGAAGACCACAAAACTATACTAAGCAGTtccatataaatgttttttttttttttttacacaggaaCCTTTATCTGATACAGAACCAAAGATGCTGACCGTAAAAAACAAAACCGACTATAGGAAGACCAGGCATCATTTAGCCACTCTTTCTGTTTAAAGATACAAATTGATCTTTTACAATTTACTTAGAAtatccaaaatataaacaatcagcTGGAAAAAGGGAGCAAAAAATATGGTGAACTCTATCCAAAGACACGTGAGCCTTCTATAGGCACAGGTTAATATGAACCAGTTATTCTGAATTAGCTGGTATTACTGGCTGACTCTTTATTGTACAGTTGTTTTGTGATTTGGAGTTCATCAGTGTTTAGGGATTAATCCTGGATTTGGAAAGTCTCAGCGGCCTTTATTCCACTAATAATGCTGAAACAGAGCATGGGGTGTTGAAATGAGATAAAGTGCTCGTCAAAGAACAAACATACTACAACAATTCTACAATAATTTGTTCCGATAAAACAGGATTCACAATTCAAAAGAATAACACTCACTAAAACCATGTTCAAATACTGATAACAAAAGGCTCTGCTGTCTTTCCAAAATAAACAAGTCTGCTCTGCTGCTGCTTTGGTGTGCTGCAGCTAATTTTAAAGCTATTAAAGACCATTATTCCTGAAGGATTCATTGTTTATTGTTCTAATCCAGGCTAGAATAAACTTCCTGCTGAACAAGGCCTTCAGGATCAGTCTTCTGAGGATGATCTTCACATGAACACGTGTCAAAGTTGCATAAATAACATTTACCAGCAGAAATTTCACCAGCAGACACTGGTGTTCGCTGGCTTATATTAACAGTCTATAGCTGTGTTCACAAAGTCTCCCTGATGCtgtgaaaacaagaaaatattaCTGTTTAACTCAGGACTATCCTTCCTTATTCCCTATCTTCCACGTTACTGTTTAAAAGCATGACAACATTATGTGCATAGTGCTGCTGCTGTCGATCACAGCAAAGAGAACCATAAACCAAAGAGATGCTGTTTAGATGCAGGATACAAGTTTGGTCCTGACCACAGTATCCCTGatggaaatctctctctctctctctctctctctcgcacacatacacactcacaaacacacacaagcacacacacaagcacacacacactcacacgtttgtcttactatccatgagaacataattattaatgcagctaattattGCTATGCTATACCTAAatctaactctaaccttaaccccagtaaacaaaaagaaaccttttggccttttttaaaaaaaaaaataaaaaaaataaaactggcaGATATTCCTAGTCTTgtggatataaaaacatgtcccACCaaaacctctcacacacacacacacacacactaatccccTGCATGTGTCTCTAGGTCCGGTCAGGAGTACGTTCCCGTCTGAGTCCATGGCCTGAGAGCTGTAAAAGGCGCTGCCAAGTGATGGAAGCCTCCGGAATCCCAGCGTGTTTCTCTTATACACAAACCACAGCAATCCCGCCATCACCGCAAAGAACAATATGGCCACTAAGACTGCAGCTGGAACAACTCCATGATGCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU219570 lncRNA upstream 34592 21407479 ~ 21409792 (+) True G185503
TU219569 lncRNA upstream 40332 21395362 ~ 21404052 (+) True G185502
TU219568 lncRNA upstream 52574 21390844 ~ 21391810 (+) True G185501
TU219567 lncRNA upstream 53816 21390351 ~ 21390568 (+) True G185500
TU219485 lncRNA upstream 104670 21327437 ~ 21339714 (+) False G185439
TU219609 lncRNA downstream 19852 21466332 ~ 21466938 (+) True G185533
TU219622 lncRNA downstream 41844 21488324 ~ 21488527 (+) True G185546
TU219890 lncRNA downstream 113687 21560167 ~ 21560379 (+) True G185751
TU220105 lncRNA downstream 574368 22020848 ~ 22021059 (+) True G185940
TU220132 lncRNA downstream 932413 22378893 ~ 22381003 (+) False pcdh17
XM_034308765.1 mRNA upstream 54178 21383873 ~ 21390206 (+) True lgsn
XM_026914590.2 mRNA upstream 54178 21383874 ~ 21390206 (+) False lgsn
XM_034308764.1 mRNA upstream 54178 21386972 ~ 21390206 (+) False lgsn
XM_026922435.2 mRNA upstream 71013 21359474 ~ 21373371 (+) True col9a1a
XM_034308958.1 mRNA upstream 94011 21346217 ~ 21350373 (+) False mrpl4
XM_034308416.1 mRNA downstream 86201 21532681 ~ 21552267 (+) True psmd14
XM_026914564.2 mRNA downstream 108221 21554701 ~ 21559002 (+) True tbr1a
XM_026918527.2 mRNA downstream 114575 21561055 ~ 21605914 (+) False slc4a10a
XM_026918518.2 mRNA downstream 114577 21561057 ~ 21605913 (+) False slc4a10a
XM_026918535.2 mRNA downstream 114577 21561057 ~ 21605913 (+) False slc4a10a
XR_004579103.1 other upstream 233845 21189786 ~ 21210539 (+) False wipf2a
TU218923 other upstream 1293490 20149971 ~ 20150894 (+) True G184979
XR_003403385.2 other upstream 1572921 19865798 ~ 19871463 (+) True ccl44
XR_004579107.1 other upstream 1609970 19827986 ~ 19834414 (+) False tax1bp3
TU218602 other upstream 1744110 19695244 ~ 19700274 (+) True rps15
trnap-agg_1 other downstream 512408 21958888 ~ 21958959 (+) True trnap-agg_1
trnaq-uug_2 other downstream 2486386 23932866 ~ 23932937 (+) True trnaq-uug_2
trnaq-cug_11 other downstream 2487652 23934132 ~ 23934203 (+) True trnaq-cug_11
trnaq-uug_3 other downstream 2488155 23934635 ~ 23934706 (+) True trnaq-uug_3
trnaq-uug_4 other downstream 2490537 23937017 ~ 23937088 (+) True trnaq-uug_4

Expression Profile