RNA id: TU219890


Basic Information

Item Value
RNA id TU219890
length 213
lncRNA type inter_gene
GC content 0.53
exon number 1
gene id G185751
representative True

Chromosome Information

Item Value
chromosome id NC_047605.1
NCBI id CM018551.1
chromosome length 26640196
location 21560167 ~ 21560379 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

gtggctgtggggatttgtgttcattcagctacaagagcattagtgagatcaggcactgatgttggtgaggaggtctggggttcagtcggtgttccagttcatcctaaaggtgttcagtggggttgaggtcagggctctgtgcaggacactcgagttcttccactccaaccttcacacaccatgtcttcatggagctcgctttgtgcacagggg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU219622 lncRNA upstream 71640 21488324 ~ 21488527 (+) True G185546
TU219609 lncRNA upstream 93229 21466332 ~ 21466938 (+) True G185533
TU219589 lncRNA upstream 113687 21444384 ~ 21446480 (+) True G185519
TU219570 lncRNA upstream 150375 21407479 ~ 21409792 (+) True G185503
TU219569 lncRNA upstream 156115 21395362 ~ 21404052 (+) True G185502
TU220105 lncRNA downstream 460469 22020848 ~ 22021059 (+) True G185940
TU220132 lncRNA downstream 818514 22378893 ~ 22381003 (+) False pcdh17
TU220165 lncRNA downstream 821019 22381398 ~ 22381611 (+) True G185997
TU220216 lncRNA downstream 868479 22428858 ~ 22429104 (+) True G186046
TU220233 lncRNA downstream 995070 22555449 ~ 22899731 (+) True G186060
XM_026914564.2 mRNA upstream 1165 21554701 ~ 21559002 (+) True tbr1a
XM_034308416.1 mRNA upstream 7900 21532681 ~ 21552267 (+) True psmd14
XM_034308765.1 mRNA upstream 169961 21383873 ~ 21390206 (+) True lgsn
XM_026914590.2 mRNA upstream 169961 21383874 ~ 21390206 (+) False lgsn
XM_034308764.1 mRNA upstream 169961 21386972 ~ 21390206 (+) False lgsn
XM_026918527.2 mRNA downstream 676 21561055 ~ 21605914 (+) False slc4a10a
XM_026918518.2 mRNA downstream 678 21561057 ~ 21605913 (+) False slc4a10a
XM_026918535.2 mRNA downstream 678 21561057 ~ 21605913 (+) False slc4a10a
XM_026918544.2 mRNA downstream 8158 21568537 ~ 21605913 (+) True slc4a10a
XM_026925444.2 mRNA downstream 51397 21611776 ~ 21615292 (+) True si:ch211-227n13.3
XR_004579103.1 other upstream 349628 21189786 ~ 21210539 (+) False wipf2a
TU218923 other upstream 1409273 20149971 ~ 20150894 (+) True G184979
XR_003403385.2 other upstream 1688704 19865798 ~ 19871463 (+) True ccl44
XR_004579107.1 other upstream 1725753 19827986 ~ 19834414 (+) False tax1bp3
TU218602 other upstream 1859893 19695244 ~ 19700274 (+) True rps15
trnap-agg_1 other downstream 398509 21958888 ~ 21958959 (+) True trnap-agg_1
trnaq-uug_2 other downstream 2372487 23932866 ~ 23932937 (+) True trnaq-uug_2
trnaq-cug_11 other downstream 2373753 23934132 ~ 23934203 (+) True trnaq-cug_11
trnaq-uug_3 other downstream 2374256 23934635 ~ 23934706 (+) True trnaq-uug_3
trnaq-uug_4 other downstream 2376638 23937017 ~ 23937088 (+) True trnaq-uug_4

Expression Profile