Gene
RNA
| Item | Value |
|---|---|
| RNA id | TU220105 |
| length | 212 |
| lncRNA type | inter_gene |
| GC content | 0.50 |
| exon number | 1 |
| gene id | G185940 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | NC_047605.1 |
| NCBI id | CM018551.1 |
| chromosome length | 26640196 |
| location | 22020848 ~ 22021059 (+) |
| genome version | GENO_Phyp_1.0_2019_striped_catfish_Genome |
| species | striped catfish (Pangasianodon hypophthalmus) |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU219890 | lncRNA | upstream | 460469 | 21560167 ~ 21560379 (+) | True | G185751 |
| TU219622 | lncRNA | upstream | 532321 | 21488324 ~ 21488527 (+) | True | G185546 |
| TU219609 | lncRNA | upstream | 553910 | 21466332 ~ 21466938 (+) | True | G185533 |
| TU219589 | lncRNA | upstream | 574368 | 21444384 ~ 21446480 (+) | True | G185519 |
| TU219570 | lncRNA | upstream | 611056 | 21407479 ~ 21409792 (+) | True | G185503 |
| TU220132 | lncRNA | downstream | 357834 | 22378893 ~ 22381003 (+) | False | pcdh17 |
| TU220165 | lncRNA | downstream | 360339 | 22381398 ~ 22381611 (+) | True | G185997 |
| TU220216 | lncRNA | downstream | 407799 | 22428858 ~ 22429104 (+) | True | G186046 |
| TU220233 | lncRNA | downstream | 534390 | 22555449 ~ 22899731 (+) | True | G186060 |
| TU220229 | lncRNA | downstream | 869225 | 22890284 ~ 22942348 (+) | True | G186058 |
| XM_026921504.2 | mRNA | upstream | 250762 | 21756590 ~ 21770086 (+) | True | lims1 |
| XM_026921496.2 | mRNA | upstream | 252127 | 21756590 ~ 21768721 (+) | False | lims1 |
| XM_026921487.2 | mRNA | upstream | 254264 | 21756590 ~ 21766584 (+) | False | lims1 |
| XM_026923268.2 | mRNA | upstream | 398571 | 21616189 ~ 21622277 (+) | True | nxph2b |
| XM_026925444.2 | mRNA | upstream | 405556 | 21611776 ~ 21615292 (+) | True | si:ch211-227n13.3 |
| XM_034308953.1 | mRNA | downstream | 291383 | 22312442 ~ 22381020 (+) | True | pcdh17 |
| XM_026943989.2 | mRNA | downstream | 1111908 | 23132967 ~ 23135152 (+) | True | fam43a |
| XM_034308916.1 | mRNA | downstream | 1148824 | 23169883 ~ 23170911 (+) | True | LOC117598438 |
| XM_034308429.1 | mRNA | downstream | 1357622 | 23378681 ~ 23387676 (+) | True | ddx59 |
| XM_026921002.2 | mRNA | downstream | 1368011 | 23389070 ~ 23410114 (+) | True | kif14 |
| trnap-agg_1 | other | upstream | 61889 | 21958888 ~ 21958959 (+) | True | trnap-agg_1 |
| XR_004579103.1 | other | upstream | 810309 | 21189786 ~ 21210539 (+) | False | wipf2a |
| TU218923 | other | upstream | 1869954 | 20149971 ~ 20150894 (+) | True | G184979 |
| XR_003403385.2 | other | upstream | 2149385 | 19865798 ~ 19871463 (+) | True | ccl44 |
| XR_004579107.1 | other | upstream | 2186434 | 19827986 ~ 19834414 (+) | False | tax1bp3 |
| trnaq-uug_2 | other | downstream | 1911807 | 23932866 ~ 23932937 (+) | True | trnaq-uug_2 |
| trnaq-cug_11 | other | downstream | 1913073 | 23934132 ~ 23934203 (+) | True | trnaq-cug_11 |
| trnaq-uug_3 | other | downstream | 1913576 | 23934635 ~ 23934706 (+) | True | trnaq-uug_3 |
| trnaq-uug_4 | other | downstream | 1915958 | 23937017 ~ 23937088 (+) | True | trnaq-uug_4 |
| trnaq-cug_12 | other | downstream | 1917250 | 23938309 ~ 23938380 (+) | True | trnaq-cug_12 |
