RNA id: TU220132


Basic Information

Item Value
RNA id TU220132
length 2111
lncRNA type sense_over
GC content 0.40
exon number 1
gene id pcdh17
representative False

Chromosome Information

Item Value
chromosome id NC_047605.1
NCBI id CM018551.1
chromosome length 26640196
location 22312442 ~ 22381020 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GCAGCTATTTTTTAATTGTGACAAGTTCTTGtcatttggatttatttttctttctttctttttttattttttcaaatctaAGCCTGCCATTTCATAAAGCAGCGTGGAGTCCCTGGCTAACATTCTGTGATACTGCCTTACTCACTCAGAAAGCTCACATTGTTACTGTAGTGCACTTGACTACAAAGAGGACGGGGGGGATTCTTGAGAATGTGCTATCTTATTTTGTATATAAGGACTTTTGAGCGGTCTTTGTATTCGCttcatatatgtgtgttttcGTTATCGTGAGCCCATCACAATTCAGATGATATTTCATCGCAATTCACACCGGTTCTTTGTCTCGGACTGTGTGAAACTTGATAGCCAAGCAtctatttttctctttgctttgatgtttttttttttttttcctcgcttTTTTATCCGTCTGGAGCTTCACTGTAGCAGTAGAGGCAGAATTCAAATGACGCATTAATGTCAGGTCTGCAGTTCGAGCATTCACCGTAGCTTCTCTTTGTAAAcaacaaatgagaaaataattatttttgattcAGGAGAATACTGACTCCACTGCTTAAATATGTGgagtgaaaactttttttttcctaaaaaatgTAATGGCTGTAAAAGGAGGTAGCTGATCCAATATGGCCTGGTTTTGTTTCTTAAGTGGTGCTGGTCTGTGTCATGAACAGATAATGAGTGCTCATCAGCTTCCCATCTCTCCATTACTGAAATGCAAGACTTTCTTGTACCTGCCTCATCTTGACTGTGTGCTCGAGTGAACTGTTACACACCTCAGGACCTCAAAGAGCCCGTGACTGACTATTTATGACACCTGATGCAGTCACCTGAGGAACAACTTAAACTGCAGCGTACAAAATAGCCTCCTATTATCCTTCATATTCACATAGACATGATAGACAGAACTATTCAcatatttttgctttatatatttatttatctgccaAGAAAGcgctctttctgtttttttttttccttctctccctGTCTTGCAGTGGGTTTATCTACACCCAGGTGCAGAGATATAAGTTTGGCATCAAGGAGAAAACGAAACTTTGTGTTGGTTTCTaattgagtgttttttttcctgcccaAACACAGTGACGAGTCTGATATTTTTGACACCCTCGACATAACCTCAACAAATAATGAAAGGCGGCACGGCGGCTTGCGCTCAGAGCTCGAAGCGGCAACTGACACGAGCGTCTTCTCTCTTCCTTTGCACTCATCATTGTAGTGCGATGCCGTGCGCTCCCTTTCATTTAAGAGAACAAAACATTCGAGAGACACGGATGATCTTATGCGCGCTTTAACCCTGAGCCAGACAGATAGAAATAACTTTTCTGTTTGTCATTTGTCTCCgtttgtttggggtttttttttccaactcaCTCTATTCACTCCAAGTTTGCTCATTTTTCACGGCTTGCAAAGATGTGCGTGTGTGGTGCACTAGTGGTTGCCATTTTGTgagcaagtgtgtgtctgtgtgtgccctAAATTACTAGAGTTATTCTCTGCGACCTAAAGTTGACTTAAAcgtatttttttcattctaaaTCCAATATTAGTGGCACAGTCAAACTGAAGACCATCCTGAGGTGTCTCTTGCAAAGCCTGTTCAGGTCTCCCACTGAGGTGGAATGAATGGTTTATTACCCAGGCCTTGCAAGCTATTTGCTGTCTAATGGAGTATAAGTTGCTGAGGTCAACACATAGTTGGAGATCCAGCATAATGCAGTTGCGCCCTCATTATTGTCTAATTACACTGGCTGGGCATGGAGAGGGATTGATCGCTGCATTAGTCAGAACAGGGGTATTTTTGGCCATCAAAGTCTGCCGCTTCAATGCGTAATTGCGTAAATGaaacccattaaaaaaaaaaaaaaaaaaaacatccttctACCGTTTCACCAAATCCTGTcctgaacacacatacacacacagtcccacACAGAGGGATCCACCATACGCTGGGCAAAAGAAATGAGGCATACATTGTATGGATAAGCTCAACTGCTATTGTCTAAGGCTGTGTTCTATGTGATctatctgaaaaacaaaacaaaaaaaagaataaaaag

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU220105 lncRNA upstream 357834 22020848 ~ 22021059 (+) True G185940
TU219890 lncRNA upstream 818514 21560167 ~ 21560379 (+) True G185751
TU219622 lncRNA upstream 890366 21488324 ~ 21488527 (+) True G185546
TU219609 lncRNA upstream 911955 21466332 ~ 21466938 (+) True G185533
TU219589 lncRNA upstream 932413 21444384 ~ 21446480 (+) True G185519
TU220165 lncRNA downstream 395 22381398 ~ 22381611 (+) True G185997
TU220216 lncRNA downstream 47855 22428858 ~ 22429104 (+) True G186046
TU220233 lncRNA downstream 174446 22555449 ~ 22899731 (+) True G186060
TU220229 lncRNA downstream 509281 22890284 ~ 22942348 (+) True G186058
TU220480 lncRNA downstream 518233 22899236 ~ 22903794 (+) True G186301
XM_026921504.2 mRNA upstream 608807 21756590 ~ 21770086 (+) True lims1
XM_026921496.2 mRNA upstream 610172 21756590 ~ 21768721 (+) False lims1
XM_026921487.2 mRNA upstream 612309 21756590 ~ 21766584 (+) False lims1
XM_026923268.2 mRNA upstream 756616 21616189 ~ 21622277 (+) True nxph2b
XM_026925444.2 mRNA upstream 763601 21611776 ~ 21615292 (+) True si:ch211-227n13.3
XM_026943989.2 mRNA downstream 751964 23132967 ~ 23135152 (+) True fam43a
XM_034308916.1 mRNA downstream 788880 23169883 ~ 23170911 (+) True LOC117598438
XM_034308429.1 mRNA downstream 997678 23378681 ~ 23387676 (+) True ddx59
XM_026921002.2 mRNA downstream 1008067 23389070 ~ 23410114 (+) True kif14
XM_026921084.2 mRNA downstream 1008067 23389070 ~ 23410114 (+) False kif14
trnap-agg_1 other upstream 419934 21958888 ~ 21958959 (+) True trnap-agg_1
XR_004579103.1 other upstream 1168354 21189786 ~ 21210539 (+) False wipf2a
TU218923 other upstream 2227999 20149971 ~ 20150894 (+) True G184979
XR_003403385.2 other upstream 2507430 19865798 ~ 19871463 (+) True ccl44
XR_004579107.1 other upstream 2544479 19827986 ~ 19834414 (+) False tax1bp3
trnaq-uug_2 other downstream 1551863 23932866 ~ 23932937 (+) True trnaq-uug_2
trnaq-cug_11 other downstream 1553129 23934132 ~ 23934203 (+) True trnaq-cug_11
trnaq-uug_3 other downstream 1553632 23934635 ~ 23934706 (+) True trnaq-uug_3
trnaq-uug_4 other downstream 1556014 23937017 ~ 23937088 (+) True trnaq-uug_4
trnaq-cug_12 other downstream 1557306 23938309 ~ 23938380 (+) True trnaq-cug_12

Expression Profile