RNA id: TU220515


Basic Information

Item Value
RNA id TU220515
length 2148
lncRNA type inter_gene
GC content 0.39
exon number 3
gene id G186331
representative True

Chromosome Information

Item Value
chromosome id NC_047605.1
NCBI id CM018551.1
chromosome length 26640196
location 23003569 ~ 23006029 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

aaattaatCTATCAGCATAGACACTTCACTGGATTTTGCACCTTTACAGGTTTAAAGGTTGCTTCTAGATCCTCTCAGTTGAAACATTCAAActgaattattatataaaacagagataaatttttcctttttttcatttaaaaaccaCGGGGTATTCAAAATGTGCACTCAAAAACAAGCAAGCAGATAGATAGCTAATCTTAACTAGATAATGTCAGCTATGTGAAACTATTCCCTTTTAAGCAGTTAAAAGGGAAATGCTTCAATGAGAACTGACTTAGGGTGAgtcaaacatttatttccacTGCAAGAAAATGGTCCTGGCCCAGACTGCGAGCTCCTGGTCTGGAACCACTGTTTGGAAAGAATACTTCAAACTTTCTTTCAAAACACTTTTGACACTTTGGACACTTGATTAGTTCTCAACGAATCAGTTATGTTAAGAAAACTGATTCAATCCTCATTATCTCAGACTGGACTATACCACTGCTACTAAAACATAATGTTAccaatgttaatgttaaagagGCAGTTATGCTGATGTTTTAGTACAAACAATAATTTTGTACTCATTTGTACGTTTTTTCTCAGGAGTCAAAAGGGTGTGTGAACATTTTGGCACTCTTAAACTTGTTGTCTGAATAGATGAATCAGGATTATTATAGGAGATGCATACAACATACAGTGTATTTACTGGACAAATGATTGTTCAAGGCCAACTTACATCAACTCCAGGAGGCCCAGGAGGTCCAGGAGGTCCCTGGTCATTAGAAAAGAAAGATTGAAATACTAATactatatagtactgtgcaaaagtcttagcaaagaaatgctgtagagcaaagatgctttcaaaaataattaaaaaaatactatgaaCAATAAACTatagcaataaacagtaataaatgaacaaagtcaatatttggtgtgatgaacctttgctttaaaaaaaaacttagtagtctcaggtacaatttgtgcagttttataaggaaatctggtaagttttactgagcatcttgcagaatacCCTTAACTTACTACTGATCACACAGAAAATGCTAATGTTACTTGCTCCTTCTATAGCACTAGCCTGGATAGTACCATGCAAGCCTTTCAGTCTTCTTACACAGAAGGATCTCTGCCAGGGAAAAGCTGATCCAAGCCTTTAGAGACATCAAGCTCCAAATAAGAGCATTTTTGAGGTAGAAGAGTCTCCTCCTTCATGGATGGTGTCCAGAGGGGAGCATGGTGGAATTTGTGCCTAAGAGCAAGCAGGCTACTCCCTCAGGCTTGTAACTCATGAGACAACATTGAGTACTGGTCCAATATATGTGtccaatatatacacacacagcaccagcaCAGAAAGGGGACTGCAATTGTTTTCTTAATACAGGATCTTACACACTTGACCCCACAGGTCAATagtttttgGCTTTTTATTTGACATTCAGGAAAAATATGAGAAAGATTAGTGGACTGAACACTGCGTTCTCAAACGTCTTCTTCTGTGTTCTCCTGTGTCTTTTGTGAACTGTGAAAAGGCTCTCGAGCTGCACAACTGAATAGTGTTCACCTCATCGTCTGGAGATTGGGAATTCAAAACCAGACAATGCCAGAGCCATCcatgagagcaaaactggctatGCTCTCAGGGTGAGAGGGGTGGCAAactctctttcccctgtcaatcatagcaatactagccaatcatgggtgtccgtgagctcatgtatgcagaacagGGCAAAGAGTCCTGCATAAATGGAGGAGTGTGTTACActaccctgtgatgcagcatgagctgCAGTTTGGAAAGATGTGGAGGTTAGCGTCACATGTCTCCTAGTTGTCGTGTGATGGGGAGAGATAGCTAGTGAGTGGGAACTAAcaagaccaaattggggagaaaatggaggaaaaaactaaatagacattaaaaatacatacagcACTGTGTTCAGGACatacaataaaatgtacaatgatGTATGCTGGGATATGTCAAGAGCAGTAAAATCGTTTTGAGGGAAAAATtagtttaggttttttttttgtttttttttttactcacagaTGATCCTTCACGCCCTCTATGTCCTTTTGGTCCTTTCGGCCCCGGTGGTCCTGGTCGTTGATCGT

Function

GO: NA

KEGG:

id description
ko04512 ECM-receptor interaction

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU220483 lncRNA upstream 45183 22956296 ~ 22958386 (+) True G186304
TU220507 lncRNA upstream 49468 22953893 ~ 22954101 (+) True G186325
TU220229 lncRNA upstream 61221 22890284 ~ 22942348 (+) True G186058
TU220480 lncRNA upstream 99775 22899236 ~ 22903794 (+) True G186301
TU220233 lncRNA upstream 103838 22555449 ~ 22899731 (+) True G186060
TU220644 lncRNA downstream 112731 23118760 ~ 23119777 (+) True G186435
TU220774 lncRNA downstream 329317 23335346 ~ 23352236 (+) True G186538
TU220923 lncRNA downstream 399475 23405504 ~ 23419593 (+) True G186643
TU220984 lncRNA downstream 470086 23476115 ~ 23476497 (+) True G186699
TU221100 lncRNA downstream 662989 23669018 ~ 23676568 (+) True G186798
XM_034308953.1 mRNA upstream 622549 22312442 ~ 22381020 (+) True pcdh17
XM_026921504.2 mRNA upstream 1233483 21756590 ~ 21770086 (+) True lims1
XM_026921496.2 mRNA upstream 1234848 21756590 ~ 21768721 (+) False lims1
XM_026921487.2 mRNA upstream 1236985 21756590 ~ 21766584 (+) False lims1
XM_026923268.2 mRNA upstream 1381292 21616189 ~ 21622277 (+) True nxph2b
XM_026943989.2 mRNA downstream 126938 23132967 ~ 23135152 (+) True fam43a
XM_034308916.1 mRNA downstream 163854 23169883 ~ 23170911 (+) True LOC117598438
XM_034308429.1 mRNA downstream 372652 23378681 ~ 23387676 (+) True ddx59
XM_026921002.2 mRNA downstream 383041 23389070 ~ 23410114 (+) True kif14
XM_026921084.2 mRNA downstream 383041 23389070 ~ 23410114 (+) False kif14
trnap-agg_1 other upstream 1044610 21958888 ~ 21958959 (+) True trnap-agg_1
XR_004579103.1 other upstream 1793030 21189786 ~ 21210539 (+) False wipf2a
TU218923 other upstream 2852675 20149971 ~ 20150894 (+) True G184979
XR_003403385.2 other upstream 3132106 19865798 ~ 19871463 (+) True ccl44
XR_004579107.1 other upstream 3169155 19827986 ~ 19834414 (+) False tax1bp3
trnaq-uug_2 other downstream 926837 23932866 ~ 23932937 (+) True trnaq-uug_2
trnaq-cug_11 other downstream 928103 23934132 ~ 23934203 (+) True trnaq-cug_11
trnaq-uug_3 other downstream 928606 23934635 ~ 23934706 (+) True trnaq-uug_3
trnaq-uug_4 other downstream 930988 23937017 ~ 23937088 (+) True trnaq-uug_4
trnaq-cug_12 other downstream 932280 23938309 ~ 23938380 (+) True trnaq-cug_12

Expression Profile