Gene
RNA
| Item | Value |
|---|---|
| RNA id | TU220644 |
| length | 915 |
| lncRNA type | inter_gene |
| GC content | 0.42 |
| exon number | 2 |
| gene id | G186435 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | NC_047605.1 |
| NCBI id | CM018551.1 |
| chromosome length | 26640196 |
| location | 23118760 ~ 23119777 (+) |
| genome version | GENO_Phyp_1.0_2019_striped_catfish_Genome |
| species | striped catfish (Pangasianodon hypophthalmus) |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU220515 | lncRNA | upstream | 112731 | 23003569 ~ 23006029 (+) | True | G186331 |
| TU220483 | lncRNA | upstream | 160374 | 22956296 ~ 22958386 (+) | True | G186304 |
| TU220507 | lncRNA | upstream | 164659 | 22953893 ~ 22954101 (+) | True | G186325 |
| TU220229 | lncRNA | upstream | 176412 | 22890284 ~ 22942348 (+) | True | G186058 |
| TU220480 | lncRNA | upstream | 214966 | 22899236 ~ 22903794 (+) | True | G186301 |
| TU220774 | lncRNA | downstream | 215569 | 23335346 ~ 23352236 (+) | True | G186538 |
| TU220923 | lncRNA | downstream | 285727 | 23405504 ~ 23419593 (+) | True | G186643 |
| TU220984 | lncRNA | downstream | 356338 | 23476115 ~ 23476497 (+) | True | G186699 |
| TU221100 | lncRNA | downstream | 549241 | 23669018 ~ 23676568 (+) | True | G186798 |
| TU221099 | lncRNA | downstream | 552207 | 23671984 ~ 23676568 (+) | False | G186798 |
| XM_034308953.1 | mRNA | upstream | 737740 | 22312442 ~ 22381020 (+) | True | pcdh17 |
| XM_026921504.2 | mRNA | upstream | 1348674 | 21756590 ~ 21770086 (+) | True | lims1 |
| XM_026921496.2 | mRNA | upstream | 1350039 | 21756590 ~ 21768721 (+) | False | lims1 |
| XM_026921487.2 | mRNA | upstream | 1352176 | 21756590 ~ 21766584 (+) | False | lims1 |
| XM_026923268.2 | mRNA | upstream | 1496483 | 21616189 ~ 21622277 (+) | True | nxph2b |
| XM_026943989.2 | mRNA | downstream | 13190 | 23132967 ~ 23135152 (+) | True | fam43a |
| XM_034308916.1 | mRNA | downstream | 50106 | 23169883 ~ 23170911 (+) | True | LOC117598438 |
| XM_034308429.1 | mRNA | downstream | 258904 | 23378681 ~ 23387676 (+) | True | ddx59 |
| XM_026921002.2 | mRNA | downstream | 269293 | 23389070 ~ 23410114 (+) | True | kif14 |
| XM_026921084.2 | mRNA | downstream | 269293 | 23389070 ~ 23410114 (+) | False | kif14 |
| trnap-agg_1 | other | upstream | 1159801 | 21958888 ~ 21958959 (+) | True | trnap-agg_1 |
| XR_004579103.1 | other | upstream | 1908221 | 21189786 ~ 21210539 (+) | False | wipf2a |
| TU218923 | other | upstream | 2967866 | 20149971 ~ 20150894 (+) | True | G184979 |
| XR_003403385.2 | other | upstream | 3247297 | 19865798 ~ 19871463 (+) | True | ccl44 |
| XR_004579107.1 | other | upstream | 3284346 | 19827986 ~ 19834414 (+) | False | tax1bp3 |
| trnaq-uug_2 | other | downstream | 813089 | 23932866 ~ 23932937 (+) | True | trnaq-uug_2 |
| trnaq-cug_11 | other | downstream | 814355 | 23934132 ~ 23934203 (+) | True | trnaq-cug_11 |
| trnaq-uug_3 | other | downstream | 814858 | 23934635 ~ 23934706 (+) | True | trnaq-uug_3 |
| trnaq-uug_4 | other | downstream | 817240 | 23937017 ~ 23937088 (+) | True | trnaq-uug_4 |
| trnaq-cug_12 | other | downstream | 818532 | 23938309 ~ 23938380 (+) | True | trnaq-cug_12 |
