RNA id: TU221123


Basic Information

Item Value
RNA id TU221123
length 2319
lncRNA type inter_gene
GC content 0.38
exon number 2
gene id G186814
representative True

Chromosome Information

Item Value
chromosome id NC_047605.1
NCBI id CM018551.1
chromosome length 26640196
location 23712033 ~ 23714371 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

ttgggTGTAAGCAAAGAGAGCGATGCACTGAGACATGTTCAGCAGCGCCAAATGTTGCGAAAAGTTCAGTTACATTCGCAGAGTGAaatctttactttttaaaaagtacttGGCCTGTGTATCATGAATATATCCACAACACACTGCGCTAATGAACATGACCCAGCTTTAAATGATCTGCAGCACCCTCTTTGTCAAGTTTTGCAGAGGCTTCATATGTAAACACATCACCATTAAGCACTACGACTAAAATCATATAGCGCTAGATGCACTATATACACACCTCAGCACTTCGGTGTGACGATTCTTCACCCTGACCCTCTGTCTCGGAGTTTAATATCAAGATAAATATGCTTCTAGGAGGCAACAGGAGGCAACTGTTATTGTGTTAACgttataaggaaaaaaaaaaaaaagttataaactGATTatagctaaataataataaacaaaaagtaaaCACTTAAAATGCTCTCGACTACTCTTGAAAACATTTTGCATGGATACTATCACAGCAAATCAATAATTCTTTAGATGCAAAAGTTCGGGTACACAGAAAGCTGTTATAACTGTAAAGAAACTCGGAGGCTTGTGGAACCCAGAATGGAAGTCAGAAGGTCATAAGCCACTCATTGAAAAGTGCACTGAATACGTTCGTAATGTAGACGAATGGGACGTCAGTGAAATGGAATACGACTACTTGAGCTTTTTGTAAGAATGACAAGTTATCTACTAACCAAGATGTGCAAGTCGACTGATCTGTGAGTGTACCTCCTACAGAGCTGAACATCTTTCAAGACGGAAAAACCTGCTGCTTATAAACGAGCCCAAACAAAcccctgccaaaaaaaaaaaaaagtaaaaacaaaaataaaacacctcaaaaaagaaaaaaaaaacaacaaaacagctcAACAGTCAACTAATTAGGCTGAAAACAGATTTCGCCTTATTGGGTATTGCCGGGCAAGCAGACTGAACGAGGCTCGGGTTTTGGTGTAGGTGAGAAAAGGCACTTAGCACGATTTATTGTGTTGAGGTTTACACTGACAACACAGTGTCTTGTCATACGTTTGTGAGATCAATGTatcaattgtttaaaaaaaaaaaaaaacagctcaaacAGCTGAAGTGATGCAATGTGCATTTGCATGATGATTATTCACATAAAGATCATCGAGctgatagatttttttattcatgttccTTCATCAGTCCTGGTCCATAATTGAATCAAAAATATTCCACGATTCTGGTTCTAGCTCTTCAGTGAGAgacagttgtttttttctaaaactgtataaaaggcttgtgtttttatcaaagcGATAAAACGTATTTGGGGATTCAGGCAGgcaaaagtgttttaaaaatagCCAGTCTTGGGACGTATGCTATAAATGACAAATGACGCCTAGTTTGTTCccttgtttctttaaaaaaaaatgcagaagtgCACGCTAAAGGCACTGGATTAGTTACAAAGCGCATGCAACCTGCAACATGTACATGATGACTTCATTCTCTTTTAATAGAACTACAAAACACAATTTAAGCCATTCAATCAGGGAAGCTTTTTCAGGGGAACGCGAGATTATTTTTATAGATACCAAGGGAGACTTTCAGTCTTTTTATAGGGTTTGTGAAGGAGTGTCATGGGACAGTTAGTTTCATttcatatggaaaaaaaaaagccatttacATTCAACAATCAGGGGTGTTGCAGCATCTGTACCAATATCCAAAAACCCATAACAGCAAGACACTTTAAGGCTTCAGTATTCCTTTGTGTGCAAGGCAAATTCtgtttggaagaaaaaaaaaaaaaagacgtttATAACcgttttgtgcatttttaatgttaatctCTACTTTTTATACTGTTATCTAATCTTTGGTTGTAAGTTGTGCATGCGtaagtgtgtctctgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgttaaataCACCTACTGTGATTCGGCCTCAGCATTACACACCACACAGAAGTAGAATTAACAGTCAATAATCATGTGATGACTTGCTAAAGCCACCTTGCACAAGTTTGGATTAAAGCTTCTCGTAGTAAAGAAGCAATCATATGATTGTAACATGAACCACGGAGCTGtaggagatttaaaaaaaatggctggcAAACATCATCCAGAAGTGGGCTATAGACAGGAGAAGCAGACGGAGGATGGATTCAGTTGGCCAGAGTCAGAGCGTGCATGTGCTTGGCGATTTCGTACACGTAGGTGATGTCAGGCCGCTTCTCCGGATCCGGGTTGATGCACATATCTACCAGCTTTC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU221100 lncRNA upstream 35465 23669018 ~ 23676568 (+) True G186798
TU221099 lncRNA upstream 35465 23671984 ~ 23676568 (+) False G186798
TU220984 lncRNA upstream 235536 23476115 ~ 23476497 (+) True G186699
TU220923 lncRNA upstream 292440 23405504 ~ 23419593 (+) True G186643
TU220774 lncRNA upstream 359797 23335346 ~ 23352236 (+) True G186538
TU221181 lncRNA downstream 77549 23791920 ~ 23792127 (+) True G186864
TU221186 lncRNA downstream 81359 23795730 ~ 23800962 (+) True G186868
TU221202 lncRNA downstream 112305 23826676 ~ 23827902 (+) True G186882
TU221284 lncRNA downstream 438744 24153115 ~ 24203702 (+) True G186949
TU221288 lncRNA downstream 441409 24155780 ~ 24162236 (+) True G186951
XM_026912961.2 mRNA upstream 238464 23413029 ~ 23473569 (+) True LOC113526144
XM_026912969.2 mRNA upstream 238464 23413029 ~ 23473569 (+) False LOC113526144
XM_034308532.1 mRNA upstream 238464 23413029 ~ 23473569 (+) False LOC113526144
XM_034308530.1 mRNA upstream 244832 23413029 ~ 23467201 (+) False LOC113526144
XM_034308531.1 mRNA upstream 261385 23413029 ~ 23450648 (+) False LOC113526144
XM_034308759.1 mRNA downstream 121332 23835703 ~ 23926144 (+) True dennd1b
XM_026917310.2 mRNA downstream 264502 23978873 ~ 24003792 (+) True aspm
XM_026917314.2 mRNA downstream 264502 23978873 ~ 24003792 (+) False aspm
XM_026913018.2 mRNA downstream 403447 24117818 ~ 24138641 (+) True b3galt2
XM_026912863.2 mRNA downstream 403447 24117818 ~ 24138641 (+) False b3galt2
trnap-agg_1 other upstream 1753074 21958888 ~ 21958959 (+) True trnap-agg_1
XR_004579103.1 other upstream 2501494 21189786 ~ 21210539 (+) False wipf2a
TU218923 other upstream 3561139 20149971 ~ 20150894 (+) True G184979
XR_003403385.2 other upstream 3840570 19865798 ~ 19871463 (+) True ccl44
XR_004579107.1 other upstream 3877619 19827986 ~ 19834414 (+) False tax1bp3
trnaq-uug_2 other downstream 218495 23932866 ~ 23932937 (+) True trnaq-uug_2
trnaq-cug_11 other downstream 219761 23934132 ~ 23934203 (+) True trnaq-cug_11
trnaq-uug_3 other downstream 220264 23934635 ~ 23934706 (+) True trnaq-uug_3
trnaq-uug_4 other downstream 222646 23937017 ~ 23937088 (+) True trnaq-uug_4
trnaq-cug_12 other downstream 223938 23938309 ~ 23938380 (+) True trnaq-cug_12

Expression Profile