RNA id: TU221287


Basic Information

Item Value
RNA id TU221287
length 411
lncRNA type inter_gene
GC content 0.42
exon number 3
gene id G186950
representative True

Chromosome Information

Item Value
chromosome id NC_047605.1
NCBI id CM018551.1
chromosome length 26640196
location 24193341 ~ 24202566 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

aaaatttcagctgtgcttagtgagaaaggagggagaataacagatttaaatacaaactatagcccattgcttaaacactgaccgactgagtgagtgagtggatgggtgggtgatagctatctctataagtgattgggaactagtaatttggctgagggtaaggagacttgagcaaccccatccccaccctgatatcttttatagctcccacagaagaaaaaagagcacagtcccatatagtacttaaaaaaaaggaacGGATGTACTTTGTGaaaatttcagctgtgcttagtgagaaaggagggagaataacagatttaaatacaaactagagcccatagcttaaacacggaccgactgagtgagtgtgtggatgggtggaggatggctatctctataagtgattgggaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU221319 lncRNA upstream 6887 24161268 ~ 24186454 (+) True G186976
TU221320 lncRNA upstream 19707 24162289 ~ 24173634 (+) True G186977
TU221288 lncRNA upstream 31105 24155780 ~ 24162236 (+) True G186951
TU221202 lncRNA upstream 365439 23826676 ~ 23827902 (+) True G186882
TU221186 lncRNA upstream 392379 23795730 ~ 23800962 (+) True G186868
TU221643 lncRNA downstream 309106 24511672 ~ 24512168 (+) True G187257
TU221647 lncRNA downstream 323118 24525684 ~ 24549720 (+) False G187258
TU221648 lncRNA downstream 323118 24525684 ~ 24552314 (+) True G187258
TU221640 lncRNA downstream 360897 24563463 ~ 24568611 (+) False oaz1a
TU221659 lncRNA downstream 372449 24575015 ~ 24576233 (+) True G187265
XM_026913018.2 mRNA upstream 54700 24117818 ~ 24138641 (+) True b3galt2
XM_026912863.2 mRNA upstream 54700 24117818 ~ 24138641 (+) False b3galt2
XM_026912944.2 mRNA upstream 54700 24117818 ~ 24138641 (+) False b3galt2
XM_034308432.1 mRNA upstream 54700 24117818 ~ 24138641 (+) False b3galt2
XM_026917314.2 mRNA upstream 189549 23978873 ~ 24003792 (+) False aspm
XM_026947256.2 mRNA downstream 5310 24207876 ~ 24210763 (+) False glrx2
XM_026947260.2 mRNA downstream 5322 24207888 ~ 24210763 (+) False glrx2
XM_026947255.2 mRNA downstream 5392 24207958 ~ 24210763 (+) False glrx2
XM_026947254.2 mRNA downstream 5405 24207971 ~ 24210763 (+) False glrx2
XM_026947259.2 mRNA downstream 5592 24208158 ~ 24210763 (+) False glrx2
trnaq-uug_6 other upstream 246278 23946992 ~ 23947063 (+) True trnaq-uug_6
trnaq-uug_5 other upstream 254453 23938817 ~ 23938888 (+) True trnaq-uug_5
trnaq-cug_12 other upstream 254961 23938309 ~ 23938380 (+) True trnaq-cug_12
trnaq-uug_4 other upstream 256253 23937017 ~ 23937088 (+) True trnaq-uug_4
trnaq-uug_3 other upstream 258635 23934635 ~ 23934706 (+) True trnaq-uug_3
TU221326 other downstream 5327 24207893 ~ 24210725 (+) True glrx2
TU221328 other downstream 5327 24207893 ~ 24210725 (+) False glrx2
trnar-acg_9 other downstream 1303857 25506423 ~ 25506495 (+) True trnar-acg_9
TU222375 other downstream 1329179 25531745 ~ 25593503 (+) False LOC113523924
TU222713 other downstream 1983296 26185862 ~ 26212109 (+) False polr2l

Expression Profile