RNA id: TU221288


Basic Information

Item Value
RNA id TU221288
length 287
lncRNA type inter_gene
GC content 0.43
exon number 3
gene id G186951
representative True

Chromosome Information

Item Value
chromosome id NC_047605.1
NCBI id CM018551.1
chromosome length 26640196
location 24155780 ~ 24162236 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

aaaagagcacagtcccatatagtacttaaaaaaaaggaacagatgtaatttgtaaaaatttcagctgtgcttagtgagaaaggagggagaataacagatttaaatacaaactatagcccatagcttaaacacggaccgactgagtgagtgtgtggatgggtggaggatggctatctctataagtgattgggaactagtaatctggctcagggtaaggtgatgtgagcaaccccacccccaaccccacccccaacctgataggttaggttggttagggttaggaatag

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU221202 lncRNA upstream 327878 23826676 ~ 23827902 (+) True G186882
TU221186 lncRNA upstream 354818 23795730 ~ 23800962 (+) True G186868
TU221181 lncRNA upstream 363653 23791920 ~ 23792127 (+) True G186864
TU221123 lncRNA upstream 441409 23712033 ~ 23714371 (+) True G186814
TU221099 lncRNA upstream 479212 23671984 ~ 23676568 (+) False G186798
TU221320 lncRNA downstream 53 24162289 ~ 24173634 (+) True G186977
TU221287 lncRNA downstream 31105 24193341 ~ 24202566 (+) True G186950
TU221643 lncRNA downstream 349436 24511672 ~ 24512168 (+) True G187257
TU221647 lncRNA downstream 363448 24525684 ~ 24549720 (+) False G187258
TU221648 lncRNA downstream 363448 24525684 ~ 24552314 (+) True G187258
XM_026913018.2 mRNA upstream 17139 24117818 ~ 24138641 (+) True b3galt2
XM_026912863.2 mRNA upstream 17139 24117818 ~ 24138641 (+) False b3galt2
XM_026912944.2 mRNA upstream 17139 24117818 ~ 24138641 (+) False b3galt2
XM_034308432.1 mRNA upstream 17139 24117818 ~ 24138641 (+) False b3galt2
XM_026917314.2 mRNA upstream 151988 23978873 ~ 24003792 (+) False aspm
XM_026947256.2 mRNA downstream 45640 24207876 ~ 24210763 (+) False glrx2
XM_026947260.2 mRNA downstream 45652 24207888 ~ 24210763 (+) False glrx2
XM_026947255.2 mRNA downstream 45722 24207958 ~ 24210763 (+) False glrx2
XM_026947254.2 mRNA downstream 45735 24207971 ~ 24210763 (+) False glrx2
XM_026947259.2 mRNA downstream 45922 24208158 ~ 24210763 (+) False glrx2
trnaq-uug_6 other upstream 208717 23946992 ~ 23947063 (+) True trnaq-uug_6
trnaq-uug_5 other upstream 216892 23938817 ~ 23938888 (+) True trnaq-uug_5
trnaq-cug_12 other upstream 217400 23938309 ~ 23938380 (+) True trnaq-cug_12
trnaq-uug_4 other upstream 218692 23937017 ~ 23937088 (+) True trnaq-uug_4
trnaq-uug_3 other upstream 221074 23934635 ~ 23934706 (+) True trnaq-uug_3
TU221326 other downstream 45657 24207893 ~ 24210725 (+) True glrx2
TU221328 other downstream 45657 24207893 ~ 24210725 (+) False glrx2
trnar-acg_9 other downstream 1344187 25506423 ~ 25506495 (+) True trnar-acg_9
TU222375 other downstream 1369509 25531745 ~ 25593503 (+) False LOC113523924
TU222713 other downstream 2023626 26185862 ~ 26212109 (+) False polr2l

Expression Profile