Gene
RNA
| Item | Value |
|---|---|
| RNA id | TU221707 |
| length | 1312 |
| lncRNA type | inter_gene |
| GC content | 0.36 |
| exon number | 2 |
| gene id | G187294 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | NC_047605.1 |
| NCBI id | CM018551.1 |
| chromosome length | 26640196 |
| location | 24706167 ~ 24707504 (+) |
| genome version | GENO_Phyp_1.0_2019_striped_catfish_Genome |
| species | striped catfish (Pangasianodon hypophthalmus) |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU221689 | lncRNA | upstream | 59505 | 24642759 ~ 24646662 (+) | True | G187286 |
| TU221662 | lncRNA | upstream | 116464 | 24589326 ~ 24589703 (+) | True | G187268 |
| TU221659 | lncRNA | upstream | 129934 | 24575015 ~ 24576233 (+) | True | G187265 |
| TU221640 | lncRNA | upstream | 137556 | 24563463 ~ 24568611 (+) | False | oaz1a |
| TU221648 | lncRNA | upstream | 153853 | 24525684 ~ 24552314 (+) | True | G187258 |
| TU221722 | lncRNA | downstream | 29105 | 24736609 ~ 24737071 (+) | True | G187309 |
| TU221735 | lncRNA | downstream | 66261 | 24773765 ~ 24774186 (+) | True | G187316 |
| TU221673 | lncRNA | downstream | 96267 | 24803771 ~ 24806565 (+) | True | G187276 |
| TU221763 | lncRNA | downstream | 224141 | 24931645 ~ 24932046 (+) | True | G187340 |
| TU221986 | lncRNA | downstream | 280375 | 24987879 ~ 24988093 (+) | True | G187527 |
| XM_026947143.2 | mRNA | upstream | 1259 | 24684609 ~ 24704908 (+) | False | ankrd24 |
| XM_026947144.2 | mRNA | upstream | 1259 | 24684629 ~ 24704908 (+) | False | ankrd24 |
| XM_034308497.1 | mRNA | upstream | 1259 | 24684634 ~ 24704908 (+) | True | ankrd24 |
| XM_034308500.1 | mRNA | upstream | 1259 | 24688037 ~ 24704908 (+) | False | ankrd24 |
| XM_034308499.1 | mRNA | upstream | 4135 | 24684629 ~ 24702032 (+) | False | ankrd24 |
| XM_026947252.2 | mRNA | downstream | 35607 | 24743111 ~ 24765317 (+) | False | LOC113547059 |
| XM_034308629.1 | mRNA | downstream | 35608 | 24743112 ~ 24765317 (+) | False | LOC113547059 |
| XM_026947251.2 | mRNA | downstream | 35610 | 24743114 ~ 24765317 (+) | True | LOC113547059 |
| XM_026947171.2 | mRNA | downstream | 102325 | 24809829 ~ 24913123 (+) | False | vps13c |
| XM_026947172.2 | mRNA | downstream | 102325 | 24809829 ~ 24913123 (+) | False | vps13c |
| TU221326 | other | upstream | 495442 | 24207893 ~ 24210725 (+) | True | glrx2 |
| TU221328 | other | upstream | 495442 | 24207893 ~ 24210725 (+) | False | glrx2 |
| trnaq-uug_6 | other | upstream | 759104 | 23946992 ~ 23947063 (+) | True | trnaq-uug_6 |
| trnaq-uug_5 | other | upstream | 767279 | 23938817 ~ 23938888 (+) | True | trnaq-uug_5 |
| trnaq-cug_12 | other | upstream | 767787 | 23938309 ~ 23938380 (+) | True | trnaq-cug_12 |
| trnar-acg_9 | other | downstream | 798919 | 25506423 ~ 25506495 (+) | True | trnar-acg_9 |
| TU222375 | other | downstream | 824241 | 25531745 ~ 25593503 (+) | False | LOC113523924 |
| TU222713 | other | downstream | 1478358 | 26185862 ~ 26212109 (+) | False | polr2l |
| TU222716 | other | downstream | 1499438 | 26206942 ~ 26210010 (+) | True | G188164 |
| TU222712 | other | downstream | 1503055 | 26210559 ~ 26212109 (+) | False | polr2l |
| species | RNA id | representative | length | rna type | GC content | exon number | chromosome id | location |
|---|---|---|---|---|---|---|---|---|
| grasscarp (Ctenopharyngodon idella) | TU182084 | True | 3012 | lncRNA | 0.42 | 2 | CI01000030 | 4242233 ~ 4245333 (-) |
