RNA id: TU221763


Basic Information

Item Value
RNA id TU221763
length 402
lncRNA type inter_gene
GC content 0.37
exon number 1
gene id G187340
representative True

Chromosome Information

Item Value
chromosome id NC_047605.1
NCBI id CM018551.1
chromosome length 26640196
location 24931645 ~ 24932046 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GATGAGCTTCTCTGCTGAAGAGGGGGAAAGGACAGAGAATCTCATCTACACTCTTAAGTCATCAGACACTCACCTGTTTTCCTCTTGCCTCTGCACTGAAGGAGACAgggctttattttttttattctgaattaCTTATATTTGTCAGTTGCATTCTACCTTTTGAAAATGTATGTGGGATAATAGGGGAGCTGTAGCCAATGTGGATTCCGGCTAAaactagaagaaaaaaaatatatatacgtACGTACACCACAATAGctgtgaaatgaagcaatcaagatgtgattgaagtgtagactttcagctttaattcaaagggaTAAAAACttttgcattaaccatttaggaattacagacattttttacagagtctctctattttcacaggctcaaaagtaa

Function

GO:

id name namespace
GO:0007399 nervous system development biological_process

KEGG:

id description
ko04550 Signaling pathways regulating pluripotency of stem cells

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU221673 lncRNA upstream 125080 24803771 ~ 24806565 (+) True G187276
TU221735 lncRNA upstream 157459 24773765 ~ 24774186 (+) True G187316
TU221722 lncRNA upstream 194574 24736609 ~ 24737071 (+) True G187309
TU221707 lncRNA upstream 224141 24706167 ~ 24707504 (+) True G187294
TU221689 lncRNA upstream 284983 24642759 ~ 24646662 (+) True G187286
TU221986 lncRNA downstream 55833 24987879 ~ 24988093 (+) True G187527
TU222026 lncRNA downstream 189201 25121247 ~ 25122115 (+) True G187563
TU222076 lncRNA downstream 243762 25175808 ~ 25176089 (+) True G187612
TU222133 lncRNA downstream 340230 25272276 ~ 25272599 (+) True G187668
TU222140 lncRNA downstream 358467 25290513 ~ 25290974 (+) True G187675
XM_026947178.2 mRNA upstream 902 24915616 ~ 24930743 (+) True rcn1
XM_026947171.2 mRNA upstream 18522 24809829 ~ 24913123 (+) False vps13c
XM_026947172.2 mRNA upstream 18522 24809829 ~ 24913123 (+) False vps13c
XM_026947173.2 mRNA upstream 18522 24809829 ~ 24913123 (+) False vps13c
XM_026947177.2 mRNA upstream 18522 24809829 ~ 24913123 (+) False vps13c
XM_026947229.2 mRNA downstream 18368 24950414 ~ 24984205 (+) True zdhhc13
XM_026910019.2 mRNA downstream 226359 25158405 ~ 25170812 (+) True immp1l
XM_034308686.1 mRNA downstream 226737 25158783 ~ 25168182 (+) False immp1l
XM_026910017.2 mRNA downstream 226815 25158861 ~ 25170812 (+) False immp1l
XM_026910020.2 mRNA downstream 226840 25158886 ~ 25170812 (+) False immp1l
TU221326 other upstream 720920 24207893 ~ 24210725 (+) True glrx2
TU221328 other upstream 720920 24207893 ~ 24210725 (+) False glrx2
trnaq-uug_6 other upstream 984582 23946992 ~ 23947063 (+) True trnaq-uug_6
trnaq-uug_5 other upstream 992757 23938817 ~ 23938888 (+) True trnaq-uug_5
trnaq-cug_12 other upstream 993265 23938309 ~ 23938380 (+) True trnaq-cug_12
trnar-acg_9 other downstream 574377 25506423 ~ 25506495 (+) True trnar-acg_9
TU222375 other downstream 599699 25531745 ~ 25593503 (+) False LOC113523924
TU222713 other downstream 1253816 26185862 ~ 26212109 (+) False polr2l
TU222716 other downstream 1274896 26206942 ~ 26210010 (+) True G188164
TU222712 other downstream 1278513 26210559 ~ 26212109 (+) False polr2l

Expression Profile