RNA id: TU222076


Basic Information

Item Value
RNA id TU222076
length 282
lncRNA type inter_gene
GC content 0.51
exon number 1
gene id G187612
representative True

Chromosome Information

Item Value
chromosome id NC_047605.1
NCBI id CM018551.1
chromosome length 26640196
location 25175808 ~ 25176089 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GGTGGTCCACTGAGAGCGAGGAGGCTCTGAGGGACTGCTTTAACACCACTGTGTGGGCTGAGCTCTTTGACCCACATGGGGAGGACATCAATGCCATCACAGACACCATAACAGGCTATATCAACTTCTGTGTTGAAAACACTGTGCCCTCCAAAACGGTACGGTGTTTTGCTAACAACAAACCGTGGATTACCCCTGACATCAAAGCTCtcctgaaggagaagaagagagctTTCAGGTCAGGGGACAAGGAGGACCTCAGGACTGTACAAAAGGAGCTGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU222026 lncRNA upstream 53693 25121247 ~ 25122115 (+) True G187563
TU221986 lncRNA upstream 187715 24987879 ~ 24988093 (+) True G187527
TU221763 lncRNA upstream 243762 24931645 ~ 24932046 (+) True G187340
TU221673 lncRNA upstream 369243 24803771 ~ 24806565 (+) True G187276
TU221735 lncRNA upstream 401622 24773765 ~ 24774186 (+) True G187316
TU222133 lncRNA downstream 96187 25272276 ~ 25272599 (+) True G187668
TU222140 lncRNA downstream 114424 25290513 ~ 25290974 (+) True G187675
TU222258 lncRNA downstream 169202 25345291 ~ 25345491 (+) True G187782
TU222386 lncRNA downstream 571021 25747110 ~ 25750632 (+) True G187895
TU222471 lncRNA downstream 742462 25918551 ~ 25919605 (+) True G187961
XM_026910019.2 mRNA upstream 4996 25158405 ~ 25170812 (+) True immp1l
XM_026910017.2 mRNA upstream 4996 25158861 ~ 25170812 (+) False immp1l
XM_026910020.2 mRNA upstream 4996 25158886 ~ 25170812 (+) False immp1l
XM_034308686.1 mRNA upstream 7626 25158783 ~ 25168182 (+) False immp1l
XM_026947229.2 mRNA upstream 191603 24950414 ~ 24984205 (+) True zdhhc13
XM_026909972.2 mRNA downstream 12204 25188293 ~ 25199986 (+) True e2f8
XM_026909971.2 mRNA downstream 13388 25189477 ~ 25199986 (+) False e2f8
XM_026909983.2 mRNA downstream 28030 25204119 ~ 25326654 (+) False nav2a
XM_026909982.2 mRNA downstream 28035 25204124 ~ 25326654 (+) True nav2a
XM_026909988.2 mRNA downstream 28065 25204154 ~ 25326654 (+) False nav2a
TU221326 other upstream 965083 24207893 ~ 24210725 (+) True glrx2
TU221328 other upstream 965083 24207893 ~ 24210725 (+) False glrx2
trnaq-uug_6 other upstream 1228745 23946992 ~ 23947063 (+) True trnaq-uug_6
trnaq-uug_5 other upstream 1236920 23938817 ~ 23938888 (+) True trnaq-uug_5
trnaq-cug_12 other upstream 1237428 23938309 ~ 23938380 (+) True trnaq-cug_12
trnar-acg_9 other downstream 330334 25506423 ~ 25506495 (+) True trnar-acg_9
TU222375 other downstream 355656 25531745 ~ 25593503 (+) False LOC113523924
TU222713 other downstream 1009773 26185862 ~ 26212109 (+) False polr2l
TU222716 other downstream 1030853 26206942 ~ 26210010 (+) True G188164
TU222712 other downstream 1034470 26210559 ~ 26212109 (+) False polr2l

Expression Profile