RNA id: TU222386


Basic Information

Item Value
RNA id TU222386
length 3452
lncRNA type inter_gene
GC content 0.38
exon number 3
gene id G187895
representative True

Chromosome Information

Item Value
chromosome id NC_047605.1
NCBI id CM018551.1
chromosome length 26640196
location 25747110 ~ 25750632 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CAAAGAAGTAATTCACTGTCACACAACACGGCTTGTTAGTATCGCAAAGCAGAAAATTCATATACAGACTTTTCATATTTACACCCAAGTGACAAGCAAAACAAAGGAATTATAAATATCTCTTAATTAACTTTACAACAGTTACATGTATACTGATCTTTCTGAGACATAAAAGAGCACTCTGTTAAATAACTGGCACATCATTGACATGGTGTGGAGAacgaaaaaacaaacaaaaaacaaagcgAGAAAGTGGTTCATGAAGTCCTCTCCAGTGAGTCAAAATAAAGGGACTGTTCAGCATTTtggcaatgaaatgttttttttttgtttgtttttttttaaacctgcttTCACAAAGCCAGGAGGAGTAATTCGCCGTTTTGTTTCTTCTCCGAGTGCAGAAGCTGCTGTTCAGTCTGTGTTTAGAGACAGCTAACGATATTTAAAATTCTTAGAAACaaagcttttctatagctcatgcataaaatcatggcATAAccataatttcatttttaaacaaaaaacatacccAGGTTTTTGGTTCAAAATAACTGCATTTGtagttcatttttataaacCCCAATAAAGTACGGTaataaatccattataacaTCATAACATATAACATCAAATTTTACAAAATCACTTATTTAAAATCGAGATTATGATTTGAAGCACATACATGAAGAAGAGCTGAGCGTTTTGTGTGAGTTTGATGAAATATTGTACACTTCTGATTGTTTTGCTGCACTGTCCCAATAAAGGAATTAACTATAGCAtattgttagtgttttttttttttttattagagtttataaaaatgGATTAACGAAGACAGGTTTTAATAGGGAGTGCTGCTAAAATGTctatttctaaaatatataatattgttacTGATGCTGCTAAACCTGcacacagagaagaaaaaaaaacagaaaacgaAGCTGAATCCATCTGACTTTGTgttaataaattagaaaaacTTTCACAATCCctttaacacaataaaaaaatccctttgtacaaaaaaaaaggaactatacaataacaataaaacatctTTTAACACATAGAAATGCGTCTCTGCACTTTCAACTCTGTAcaactgggtttttttttgtcagtcaGTTTGAAATATTTAGGTAAAACAGGAAGCAGGTTACGTGGAGATGTTAAAAACAAGCCGAGAGCGGAGGATGAAGTAGCTGCCGAGCCCTTCCGTCAGGATTATTGGCCtcgctaagtgtgtgtgtgtgtgtgtcagtggggcATGTGCCGATATTAAATCTTCACTCTAGTTttcattacttcctgttttgatTGTGTTCCTAACAAAGACCTTCGGCTGTGTCTCATTTGGGATTCCACGCTTTCTAGCAATCGCTTACtagagtctcacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacagagtttgaaCCGTCTACGCTGAAATACCGAGGATATCGTTTGAATATGACGGTATACCGTAACACcgattatcagcacatgcccagtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtggggtagcAGCAAATCAGCATTGTGCTGAAACATGAGAAATGAACTTCAATGCATCACTGATCTATagcgtagtgtgtgtgtgtctgaaatcagaaatataaatatgaagcgaagaaatcatcatcatcatcatcatcatcatcatcatcatcatcatcatccagcttttttttcttttaaccttCCAAGTAATACAATCTTCTGTACTAGGGGTGAGCGATacggttaaaaaaaatcatatcgcAATACTTAAAAACGCTTTCGTGATTGATGCGCGTCATAATGCTTTCGTTTTGATGAAATATTTAATGGATTAAGGAACAAAAATAAGCTTTAtaactaaaattattattattattattattttaaattattatttttttaaactaaggAAATCATTACGgagttatttctttttttctgtgctgttaTCATGATATTAGGCGTGCACGCTCTACATCACGGATGATACAAGAggaaatgggcaaaaatattgGTACCCCTGCCTGGATTTTATTCCAGTAAAACACAATTTGCCcccaaaaaaatgttcaaatgtttaaaaaaaattatttatacctttgcactgtttgcacaggaacaaaaaacaaaacttttttgaaaatatctgcattttttaaaaacctattTTACTAAAGCATTCTAAAAATAGCTTGGACAAAATTATTGGTACCCTTTGAAAAGTcgtaagaaaaaataaaagcaggcTGGAGATCAGTTTCGTTATCTGCagatcaggagaaaaaaaaatcatttgcgATGTCGagaaaacagcacagaaaaatataaacgACTCGCGCTGTTTTGGACGAATGGCTACATCTGGGCTACgaggaacgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgatttctgacTGAGCTGTTCCTTTTTAACTGTCCATCAAGTACATATGTTATACTGTctacatttacaaaaaagaaGTGAGTAAAACATTACAATTCAGAGACAGACGATGAGAAAAAGAAGCAACGTCTCCATCATCAGCCCGTTCGTGCTGCATCCCGCAGGAGGTTCAGAAAGCACCGCGACAGCGCTCTGTCCTTGTGCGCGGCCATTAATCCATGTCCTGTGAGGCCTTTAGCAGTATTTAGATAAATAAAGTACATGAAGGTAAGATGAGTGATGAGGGGtggctgttaaaaaaaaaacgtctgcTGTTTACCATctgcgaaaaaaaaaagcctcgtTTCATACACAATAAtctgtctttgtttttaaaaaaaaaaaaaaaaaaaaacagttcccaGTATACTGATATATCaatattttcttaaattgtCCTTTTGATCCAGCTCTGTTCATATTCctctgaaaacaaaacaaaaaaacctcaatGGTGTAAGAGTCAGCGTTGTCCGTCCACTGAAGATACTGGATGGTGGGCCAGTgctgtgtacgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtggtttaggcTCCAGTAGATGAGTgttttgagtgtgtgagtgtgtgtgtaggtgtgagtgAGCTTCACACTTCGCTCTCAGTGGAGGGTTTGCGATTTGGGACCCAGCCCGTGTCGGGGAGCGTGCTGTGGCGTTTGGGCGTGACGACGGGAGCGGTGTTCAGACTCgagcattctgattggtcgccTTGAAGCAGCTGTTCGGTCTCGGTGTCGTCCAAGGAGGCGGAGCTTGCCTGAAGGGAGGCGGAGCTGGCCTGTAAGGACACCGTGTCGGTGCGCATGCAGGTTTTAAAGGTAGCTCCTCGACACACTTTCAGCTGCTTCAGATCCTCCCAGTAAAGCTCCTCCCCTGAGAGGAGACACACCCCCTCTACTATACGGATCTTCTCGTTGGTGTAAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU222258 lncRNA upstream 401619 25345291 ~ 25345491 (+) True G187782
TU222140 lncRNA upstream 456136 25290513 ~ 25290974 (+) True G187675
TU222133 lncRNA upstream 474511 25272276 ~ 25272599 (+) True G187668
TU222076 lncRNA upstream 571021 25175808 ~ 25176089 (+) True G187612
TU222026 lncRNA upstream 624995 25121247 ~ 25122115 (+) True G187563
TU222471 lncRNA downstream 167919 25918551 ~ 25919605 (+) True G187961
TU222482 lncRNA downstream 191260 25941892 ~ 25949972 (+) True G187970
TU222672 lncRNA downstream 238166 25988798 ~ 25993403 (+) True G188127
TU222720 lncRNA downstream 358991 26109623 ~ 26109848 (+) True G188168
TU222731 lncRNA downstream 402897 26153529 ~ 26166792 (+) True G188179
XM_034308508.1 mRNA upstream 50238 25531754 ~ 25696872 (+) True LOC113523924
XM_034308509.1 mRNA upstream 50238 25531754 ~ 25696872 (+) False LOC113523924
XM_026910028.2 mRNA upstream 262300 25455708 ~ 25484810 (+) True slc6a5
XM_034308863.1 mRNA upstream 262300 25456587 ~ 25484810 (+) False slc6a5
XM_026910021.2 mRNA upstream 298349 25387312 ~ 25448761 (+) True prmt3
XM_026909993.2 mRNA downstream 173548 25924180 ~ 25930589 (+) True tollip
XM_034308780.1 mRNA downstream 288754 26039386 ~ 26062656 (+) True LOC113523928
XM_034308692.1 mRNA downstream 333025 26083657 ~ 26095138 (+) True slc38a7
XM_034308615.1 mRNA downstream 348892 26099524 ~ 26138619 (+) False helz2a
XM_026910023.2 mRNA downstream 368776 26119408 ~ 26138619 (+) True helz2a
TU222375 other upstream 153607 25531745 ~ 25593503 (+) False LOC113523924
trnar-acg_9 other upstream 240615 25506423 ~ 25506495 (+) True trnar-acg_9
TU221326 other upstream 1536385 24207893 ~ 24210725 (+) True glrx2
TU221328 other upstream 1536385 24207893 ~ 24210725 (+) False glrx2
trnaq-uug_6 other upstream 1800047 23946992 ~ 23947063 (+) True trnaq-uug_6
TU222713 other downstream 435230 26185862 ~ 26212109 (+) False polr2l
TU222716 other downstream 456310 26206942 ~ 26210010 (+) True G188164
TU222712 other downstream 459927 26210559 ~ 26212109 (+) False polr2l
TU222884 other downstream 510045 26260677 ~ 26318575 (+) False syt7b

Expression Profile