RNA id: TU222672



Basic Information


Item Value
RNA id TU222672
length 1067
lncRNA type inter_gene
GC content 0.44
exon number 2
gene id G188127
representative True

Chromosome Information


Item Value
chromosome id NC_047605.1
NCBI id CM018551.1
chromosome length 26640196
location 25988798 ~ 25993403 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence


GGGCCAAAGTCCATCCAGTCAGACCAAGAGCACTCATACCCGCAATGAGGTGTGGGCTGAATTGTAGATTGTGTCACAGTTGGGGATGTTGTAAGTGGGgttgtggttgttgtacttGGTGTTGTTGCAGATGTTGTACTTGGTGCTGTTGTacttgttggtgttgttggtgttgatgttgttgttggttttgttgtagttgtttccggtcttgttgttgttggtgttgtagttgttggtgttgtagttgttgtagtggttgttgttgtagttgatgatggtgttgtagttggtggtgttgtagttgttgttgctgGTGGtGTAgctgttggtgttgttgtggtACACCATTCTGGTAATTGACAACAATACACTCTAATTTCATAGTCAAAGCACTGCTGTTGAAGACCTTGATTTTCATTGAGACAGATGAGTCCATCTTGGGCATTACAGGTCACTTCCTGGCCCAATTGTGAGAGGGTAAGGTCAGGGTAGAGTTTTGCTCGGCATTCAACTTTTGGTGGGGTGGAACAGATCTTAGGATATGTGTCACTTATCCTTCTTATTGGTACAACTTCACCACCATTAGCACCAGTTGTAGGAGGGCCAAAGTCCATCCAGTCAGACCAAGAGCACTCATACCCGCAATGAGGTGTGGGCTGAATTGTAGATTGTGTCACAGTTGGGGATGTTGTAAGTGGGgttgtggttgttgtacttGGTGTTGTTGCAGATGTTGTACTTGGTGCTGTTGTacttgttggtgttgttggtgttgatgttgttgttggttttgttgtagttgtttccggtcttgttgttgttggtgttgtagttgttgtagtggttgttgttgtagttgatggtggtgttgtagttgttgtggtgttgttgttgttgttgtagttgttgtagctgttggtgttgttgtggtACACCATTCTGGTAATTGACAACAATACACTCTAATTTCATAGTCAAAGCACTGCTGTTGAAGACCTTGATTTTCGTTGAGACAGATGAGTCCATCTTGGGCATTACAGGTCACTTCCTGGCCCAATTGTGAG

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU222482 lncRNA upstream 38826 25941892 ~ 25949972 (+) True G187970
TU222471 lncRNA upstream 69193 25918551 ~ 25919605 (+) True G187961
TU222386 lncRNA upstream 238166 25747110 ~ 25750632 (+) True G187895
TU222258 lncRNA upstream 643307 25345291 ~ 25345491 (+) True G187782
TU222140 lncRNA upstream 697824 25290513 ~ 25290974 (+) True G187675
TU222720 lncRNA downstream 116220 26109623 ~ 26109848 (+) True G188168
TU222731 lncRNA downstream 160126 26153529 ~ 26166792 (+) True G188179
TU222738 lncRNA downstream 167911 26161314 ~ 26164756 (+) True G188184
TU222739 lncRNA downstream 168905 26162308 ~ 26164756 (+) False G188184
TU222764 lncRNA downstream 225528 26218931 ~ 26222921 (+) True G188202
XM_026909993.2 mRNA upstream 58209 25924180 ~ 25930589 (+) True tollip
XM_034308508.1 mRNA upstream 291926 25531754 ~ 25696872 (+) True LOC113523924
XM_034308509.1 mRNA upstream 291926 25531754 ~ 25696872 (+) False LOC113523924
XM_026910028.2 mRNA upstream 503988 25455708 ~ 25484810 (+) True slc6a5
XM_034308780.1 mRNA downstream 45983 26039386 ~ 26062656 (+) True LOC113523928
XM_034308692.1 mRNA downstream 90254 26083657 ~ 26095138 (+) True slc38a7
XM_034308615.1 mRNA downstream 106121 26099524 ~ 26138619 (+) False helz2a
XM_026910023.2 mRNA downstream 126005 26119408 ~ 26138619 (+) True helz2a
XM_026910854.2 mRNA downstream 217145 26210548 ~ 26212115 (+) True polr2l
TU222375 other upstream 395295 25531745 ~ 25593503 (+) False LOC113523924
trnar-acg_9 other upstream 482303 25506423 ~ 25506495 (+) True trnar-acg_9
TU221326 other upstream 1778073 24207893 ~ 24210725 (+) True glrx2
TU221328 other upstream 1778073 24207893 ~ 24210725 (+) False glrx2
trnaq-uug_6 other upstream 2041735 23946992 ~ 23947063 (+) True trnaq-uug_6
TU222713 other downstream 192459 26185862 ~ 26212109 (+) False polr2l
TU222716 other downstream 213539 26206942 ~ 26210010 (+) True G188164
TU222712 other downstream 217156 26210559 ~ 26212109 (+) False polr2l
TU222884 other downstream 267274 26260677 ~ 26318575 (+) False syt7b

Expression Profile